SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. (Q41010719)

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30 December 2019

title

SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins (English)

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30 December 2019

1

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30 December 2019

Mikhail Gelfand

series ordinal

4

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30 December 2019

2

Pavel S Novichkov

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30 December 2019

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Aleksandra B Rakhmaninova

series ordinal

5

object named as

Aleksandra B Rakhmaninova

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30 December 2019

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Andrey A Mironov

3

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30 December 2019

language of work or name

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1 July 2004

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30 December 2019

published in

Nucleic Acids Research

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30 December 2019

volume

32

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30 December 2019

issue

Web Server issue

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30 December 2019

page(s)

W424-8

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Predicting functional divergence in protein evolution by site-specific rate shifts

30 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441529

Predicting ligand-binding function in families of bacterial receptors

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441529

An evolutionary trace method defines binding surfaces common to protein families

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441529

A method to predict functional residues in proteins

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441529

Amino acid substitution matrices from protein blocks

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441529

Automated selection of positions determining functional specificity of proteins by comparative analysis of orthologous groups in protein families.

26 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441529

BATMAS30: amino acid substitution matrix for alignment of bacterial transporters.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441529

Using orthologous and paralogous proteins to identify specificity-determining residues in bacterial transcription factors.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441529

Analysis and prediction of functional sub-types from protein sequence alignments.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=441529

Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation.

19 August 2018

1 reference

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19 August 2018

Identifiers

DOI

10.1093/NAR/GKH391

1 reference

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journals/nar/KalininaNMGR04

30 December 2019

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

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30 December 2019

PubMed publication ID

15215423

1 reference