Thermodynamics of base pairing (Q41110015)

26 September 2017

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title

Thermodynamics of base pairing (English)

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26 September 2017

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Turner DH

1

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26 September 2017

publication date

1 June 1996

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Current Opinion in Structural Biology

26 September 2017

published in

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26 September 2017

volume

6

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26 September 2017

issue

3

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26 September 2017

page(s)

299-304

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26 September 2017

cites work

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DNA lesions. A thermodynamic perspective

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Predicting DNA duplex stability from the base sequence

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Improved nearest-neighbor parameters for predicting DNA duplex stability

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Sequence specific thermodynamic and structural properties for DNA.RNA duplexes

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Relative thermodynamic stability of DNA, RNA, and DNA:RNA hybrid duplexes: relationship with base composition and structure.

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Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes

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Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

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Sequence dependence of stability for coaxial stacking of RNA helixes with Watson-Crick base paired interfaces

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Influence of base composition, base sequence, and duplex structure on DNA hydration: apparent molar volumes and apparent molar adiabatic compressibilities of synthetic and natural DNA duplexes at 25 degrees C

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Differential hydration of dA.dT base pairs in parallel-stranded DNA relative to antiparallel DNA

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Effects of GA mismatches on the structure and thermodynamics of RNA internal loops

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Purine-purine mismatches in RNA helices: evidence for protonated G.A pairs and next-nearest neighbor effects

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Thermodynamic stability and solution conformation of tandem G.A mismatches in RNA and RNA.DNA hybrid duplexes

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The stability and structure of tandem GA mismatches in RNA depend on closing base pairs

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Structure of (rGGCGAGCC)2 in solution from NMR and restrained molecular dynamics

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Solution structure of a GA mismatch DNA sequence, d(CCATGAATGG)2, determined by 2D NMR and structural refinement methods

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NMR and molecular modeling evidence for a G.A mismatch base pair in a purine-rich DNA duplex

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7 January 2021

Base pairing geometry in GA mismatches depends entirely on the neighboring sequence

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Parallel-stranded duplex DNA containing blocks of trans purine-purine and purine-pyrimidine base pairs

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The 2,6-Diaminopurine Riboside.cntdot.5-Methylisocytidine Wobble Base Pair: An Isoenergetic Substitution for the Study of G.cntdot.U Pairs in RNA

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Minor groove recognition of the conserved G.U pair at the Tetrahymena ribozyme reaction site

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Oligonucleotide N3'-->P5' phosphoramidates

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Characterization of fully 2'-modified oligoribonucleotide hetero- and homoduplex hybridization and nuclease sensitivity

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7 January 2021

On the conformational stability of oligonucleotide duplexes and tRNA molecules

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A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

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7 January 2021

Geometries, charges, dipole moments and interaction energies of normal, tautomeric and novel bases.

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7 January 2021

Do C-H...O hydrogen bonds contribute to the stability of nucleic acid base pairs?

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Crystal structure of an RNA double helix incorporating a track of non-Watson-Crick base pairs

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Structure of an RNA double helix including uracil-uracil base pairs in an internal loop

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7 January 2021

The structure of r(UUCGCG) has a 5'-UU-overhang exhibiting Hoogsteen-like trans U.U base pairs

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7 January 2021

10.1016/S0959-440X(96)80047-9

Identifiers

DOI

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26 September 2017

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