Ion-RNA interactions thermodynamic analysis of the effects of mono- and divalent ions on RNA conformational equilibria (Q41131875)

27 September 2017

Ion-RNA interactions thermodynamic analysis of the effects of mono- and divalent ions on RNA conformational equilibria (English)

1 reference

27 September 2017

1 reference

Desirae Leipply

1

1 reference

27 September 2017

Dominic Lambert

series ordinal

2

1 reference

27 September 2017

David E Draper

series ordinal

3

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27 September 2017

language of work or name

English

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publication date

17 November 2009

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27 September 2017

Methods in Enzymology

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27 September 2017

469

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27 September 2017

433-463

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Direct quantitation of Mg2+-RNA interactions by use of a fluorescent dye.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

RNA folding: thermodynamic and molecular descriptions of the roles of ions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Mg2+-RNA interaction free energies and their relationship to the folding of RNA tertiary structures

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Structural basis for discriminative regulation of gene expression by adenine- and guanine-sensing mRNAs

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

LINKED FUNCTIONS AND RECIPROCAL EFFECTS IN HEMOGLOBIN: A SECOND LOOK.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Stability and cooperativity of individual tertiary contacts in RNA revealed through chemical denaturation.

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Characterization of a "kissing" hairpin complex derived from the human immunodeficiency virus genome

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Apparent heat capacity change accompanying a nonspecific protein-DNA interaction. Escherichia coli SSB tetramer binding to oligodeoxyadenylates

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Transfer RNA in solution: selected topics

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Defining the inside and outside of a catalytic RNA molecule

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Charge density of divalent metal cations determines RNA stability

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Determining the Mg2+ stoichiometry for folding an RNA metal ion core

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Electrostatic interactions in a peptide--RNA complex.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Conformational changes of transfer RNA. The role of magnesium(II)

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

The influence of monovalent cation size on the stability of RNA tertiary structures

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Importance of partially unfolded conformations for Mg(2+)-induced folding of RNA tertiary structure: structural models and free energies of Mg2+ interactions.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Tertiary structure of an RNA pseudoknot is stabilized by "diffuse" Mg2+ ions.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Generalized derivation of an exact relationship linking different coefficients that characterize thermodynamic effects of preferential interactions

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

The interpretation of Mg(2+) binding isotherms for nucleic acids using Poisson-Boltzmann theory.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3001044

Thermodynamics of (dG-dC)3 double-helix formation in water and deuterium oxide

19 August 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2969021-2

7 January 2021

Affinities and selectivities of divalent cation binding sites within an RNA tertiary structure

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2969021-2

7 January 2021

A thermodynamic framework and cooperativity in the tertiary folding of a Mg2+-dependent ribozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2969021-2

7 January 2021

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

1 reference

https://api.crossref.org/works/10.1016%2FS0076-6879%2809%2969021-2

7 January 2021

Interactions of polyelectrolytes with simple electrolytes. II. Donnan equilibria obtained with DNA in solutions of 1-1 electrolytes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20946802

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1016/S0076-6879(09)69021-2

1 reference

27 September 2017

1 reference

27 September 2017

1 reference