Proteomic analysis of small acid soluble proteins in the spore core of Bacillus subtilis ΔprpE and 168 strains with predictions of peptides liquid chromatography retention times as an additional tool in protein identification (Q41204406)

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scientific article published on 22 November 2010

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English	Proteomic analysis of small acid soluble proteins in the spore core of Bacillus subtilis ΔprpE and 168 strains with predictions of peptides liquid chromatography retention times as an additional tool in protein identification	scientific article published on 22 November 2010

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scholarly article

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16 January 2020

Proteomic analysis of small acid soluble proteins in the spore core of Bacillus subtilis ΔprpE and 168 strains with predictions of peptides liquid chromatography retention times as an additional tool in protein identification (English)

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16 January 2020

molecular biology

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Bacillus subtilis

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Bacillus subtilis

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Katarzyna Macur

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16 January 2020

Caterina Temporini

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16 January 2020

Michał Obuchowski

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16 January 2020

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16 January 2020

Gabriella Massolini

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Gabriella Massolini

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16 January 2020

Jolanta Grzenkowicz-Wydra

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Jolanta Grzenkowicz-Wydra

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16 January 2020

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22 November 2010

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16 January 2020

Proteome Science

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16 January 2020

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16 January 2020

1

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60

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16 January 2020

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003637

28 September 2017

Predictions of peptides' retention times in reversed-phase liquid chromatography as a new supportive tool to improve protein identification in proteomics

1 reference

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28 September 2017

Practical implementation of 2D HPLC scheme with accurate peptide retention prediction in both dimensions for high-throughput bottom-up proteomics

1 reference

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28 September 2017

Informatics for peptide retention properties in proteomic LC-MS.

1 reference

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28 September 2017

QSRR: quantitative structure-(chromatographic) retention relationships

1 reference

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

1 reference

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28 September 2017

History of science--spores

1 reference

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28 September 2017

Improved peptide elution time prediction for reversed-phase liquid chromatography-MS by incorporating peptide sequence information.

1 reference

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28 September 2017

An improved model for prediction of retention times of tryptic peptides in ion pair reversed-phase HPLC: its application to protein peptide mapping by off-line HPLC-MALDI MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003637

28 September 2017

Mass spectral analysis in proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003637

28 September 2017

Proteomics characterization of novel spore proteins of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003637

28 September 2017

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

1 reference

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Resistance of Bacillus endospores to extreme terrestrial and extraterrestrial environments

1 reference

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28 September 2017

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003637

28 September 2017

Proteome analysis: biological assay or data archive?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003637

28 September 2017

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

1 reference

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28 September 2017

Immunoelectron microscopic localization of small, acid-soluble spore proteins in sporulating cells of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003637

28 September 2017

Regulation of expression of genes coding for small, acid-soluble proteins of Bacillus subtilis spores: studies using lacZ gene fusions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003637

28 September 2017

Different small, acid-soluble proteins of the alpha/beta type have interchangeable roles in the heat and UV radiation resistance of Bacillus subtilis spores

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003637

28 September 2017

Cloning, nucleotide sequencing, and genetic mapping of the gene for small, acid-soluble spore protein gamma of Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003637

28 September 2017

DNA in dormant spores of Bacillus species is in an A-like conformation

1 reference

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28 September 2017

Correctness of protein identifications of Bacillus subtilis proteome with the indication on potential false positive peptides supported by predictions of their retention times.

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17 June 2018

Expression of genes coding for GerA and GerK spore germination receptors is dependent on the protein phosphatase PrpE

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17 June 2018

Evaluation of a generalized use of the log Sum(k+1)AA descriptor in a QSRR model to predict peptide retention on RPLC systems

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19 August 2018

Prediction of liquid chromatographic retention times of peptides generated by protease digestion of the Escherichia coli proteome using artificial neural networks.

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Structure and properties of the C-terminal domain of insulin-like growth factor-binding protein-1 isolated from human amniotic fluid

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19 August 2018

Prediction of peptide retention at different HPLC conditions from multiple linear regression models.

1 reference

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19 August 2018

Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome

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19 August 2018

Prediction of high-performance liquid chromatography retention of peptides with the use of quantitative structure-retention relationships.

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19 August 2018

A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores

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19 August 2018

Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses

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19 August 2018

Regulation of four genes encoding small, acid-soluble spore proteins in Bacillus subtilis.

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19 August 2018

Analysis of the regulation and function of five genes encoding small, acid-soluble spore proteins of Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/21092197

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prediction of Chromatographic Retention and Protein Identification in Liquid Chromatography/Mass Spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/21092197

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1477-5956-8-60

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Europe PubMed Central

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16 January 2020

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16 January 2020

PubMed publication ID

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16 January 2020

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