Testing the IMEter on rice introns and other aspects of intron-mediated enhancement of gene expression. (Q41208636)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20855457%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

title

Testing the IMEter on rice introns and other aspects of intron-mediated enhancement of gene expression (English)

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14 February 2020

author

Lauraemmamaria Morello

1

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14 February 2020

author name string

Silvia Gianì

2

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14 February 2020

Filippo Troina

3

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14 February 2020

Diego Breviario

4

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14 February 2020

publication date

20 September 2010

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Journal of Experimental Botany

14 February 2020

published in

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14 February 2020

volume

62

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14 February 2020

issue

2

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14 February 2020

page(s)

533-544

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Longer first introns are a general property of eukaryotic gene structure

14 February 2020

cites work

1 reference

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Promoter-proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression

28 September 2017

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Intron size, abundance, and distribution within untranslated regions of genes

28 September 2017

1 reference

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Effect of 5'UTR introns on gene expression in Arabidopsis thaliana.

28 September 2017

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How introns influence and enhance eukaryotic gene expression

28 September 2017

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Requirements for intron-mediated enhancement of gene expression in Arabidopsis.

28 September 2017

1 reference

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Petunia actin-depolymerizing factor is mainly accumulated in vascular tissue and its gene expression is enhanced by the first intron

28 September 2017

1 reference

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A long leader intron of the Ostub16 rice beta-tubulin gene is required for high-level gene expression and can autonomously promote transcription both in vivo and in vitro

28 September 2017

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Tissue-preferential expression of a rice alpha-tubulin gene, OsTubA1, mediated by the first intron

28 September 2017

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A combinatorial role for exon, intron and splice site sequences in splicing in maize.

28 September 2017

1 reference

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Introns act post-transcriptionally to increase expression of the Arabidopsis thaliana tryptophan pathway gene PAT1.

28 September 2017

1 reference

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Characterization of intronic uridine-rich sequence elements acting as possible targets for nuclear proteins during pre-mRNA splicing in Nicotiana plumbaginifolia

28 September 2017

1 reference

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3' splice site selection in dicot plant nuclei is position dependent

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

GUS fusions: beta-glucuronidase as a sensitive and versatile gene fusion marker in higher plants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Introns increase gene expression in cultured maize cells

28 September 2017

1 reference

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Enhancement of foreign gene expression by a dicot intron in rice but not in tobacco is correlated with an increased level of mRNA and an efficient splicing of the intron

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Intron-mediated enhancement of heterologous gene expression in maize

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Different effects of intron nucleotide composition and secondary structure on pre-mRNA splicing in monocot and dicot plants

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Physical evidence for cotranslational regulation of beta-tubulin mRNA degradation

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Intron splicing and intron-mediated enhanced expression in monocots

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

In trangenic rice, alpha- and beta-tubulin regulatory sequences control GUS amount and distribution through intron mediated enhancement and intron dependent spatial expression

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Seed-specific expression of sesame microsomal oleic acid desaturase is controlled by combinatorial properties between negative cis-regulatory elements in the SeFAD2 promoter and enhancers in the 5'-UTR intron

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Functional analysis of DNA sequences controlling the expression of the rice OsCDPK2 gene.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Introns and their positions affect the translational activity of mRNA in plant cells

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Intron-mediated enhancement of gene expression independent of unique intron sequences and splicing

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Intron-mediated enhancement of transgene expression in maize is a nuclear, gene-dependent process

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

The combination of a novel stimulatory element in the first exon of the maize Shrunken-1 gene with the following intron 1 enhances reporter gene expression up to 1000-fold

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

The small genome of Arabidopsis contains at least nine expressed beta-tubulin genes

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Maize polyubiquitin genes: structure, thermal perturbation of expression and transcript splicing, and promoter activity following transfer to protoplasts by electroporation

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

pEmu: an improved promoter for gene expression in cereal cells.

14 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Introns control expression of sucrose transporter LeSUT1 in trichomes, companion cells and in guard cells.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Gene expression enhancement mediated by the 5' UTR intron of the rice rubi3 gene varied remarkably among tissues in transgenic rice plants

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Transcriptional and post-transcriptional enhancement of gene expression by the 5' UTR intron of rice rubi3 gene in transgenic rice cells

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Differential expansion and expression of alpha- and beta-tubulin gene families in Populus

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Expression enhancement of a rice polyubiquitin gene promoter

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

The effect of intron location on intron-mediated enhancement of gene expression in Arabidopsis

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Multiple conserved 5' elements are required for high-level pollen expression of the Arabidopsis reproductive actin ACT1.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Introns are key regulatory elements of rice tubulin expression

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Splicing of the maize Sh1 first intron is essential for enhancement of gene expression, and a T-rich motif increases expression without affecting splicing

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Rice Triosephosphate Isomerase Gene 5[prime] Sequence Directs [beta]-Glucuronidase Activity in Transgenic Tobacco but Requires an Intron for Expression in Rice.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Separable whorl-specific expression and negative regulation by enhancer elements within the AGAMOUS second intron

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

Intron position affects expression from the tpi promoter in rice.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

The first intron of the Arabidopsis thaliana gene coding for elongation factor 1 beta contains an enhancer-like element

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

A potato Sus3 sucrose synthase gene contains a context-dependent 3' element and a leader intron with both positive and negative tissue-specific effects.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3003800

An upstream region in the first intron of petunia actin-depolymerizing factor 1 affects tissue-specific expression in transgenic Arabidopsis (Arabidopsis thaliana)

19 August 2018

1 reference

12 December 2020

Distinct roles of the first introns on the expression of Arabidopsis profilin gene family members

1 reference

12 December 2020

Tissue-dependent enhancement of transgene expression by introns of replacement histone H3 genes of Arabidopsis

1 reference

12 December 2020

Test of the combinatorial model of intron recognition in a native maize gene

1 reference

12 December 2020

The leader intron of Arabidopsis thaliana genes encoding cytochrome c oxidase subunit 5c promotes high-level expression by increasing transcript abundance and translation efficiency

1 reference

12 December 2020

Intron enhancement of gene expression and the splicing efficiency of introns in maize cells

1 reference

12 December 2020

The AG dinucleotide terminating introns is important but not always required for pre-mRNA splicing in the maize endosperm

1 reference

12 December 2020

Identifiers

DOI

10.1093/JXB/ERQ273

1 reference

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14 February 2020

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14 February 2020

PubMed publication ID

20855457

1 reference