Molecular dynamics of water-mediated interactions of a linear benzimidazole-biphenyl diamidine with the DNA minor groove (Q41385158)

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scientific article published on June 2009

Molecular Dynamics of Water-Mediated Interactions of a Linear Benzimidazole−Biphenyl Diamidine with the DNA Minor Groove

Language	Label	Description	Also known as
English	Molecular dynamics of water-mediated interactions of a linear benzimidazole-biphenyl diamidine with the DNA minor groove	scientific article published on June 2009	Molecular Dynamics of Water-Mediated Interactions of a Linear Benzimidazole−Biphenyl Diamidine with the DNA Minor Groove

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

30 September 2017

Molecular dynamics of water-mediated interactions of a linear benzimidazole-biphenyl diamidine with the DNA minor groove (English)

1 reference

Europe PubMed Central

PMC publication ID

30 September 2017

author name string

Prashanth Athri

1

1 reference

Europe PubMed Central

PMC publication ID

30 September 2017

W David Wilson

2

1 reference

Europe PubMed Central

PMC publication ID

30 September 2017

language of work or name

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publication date

1 June 2009

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Europe PubMed Central

PMC publication ID

30 September 2017

Journal of the American Chemical Society

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Europe PubMed Central

PMC publication ID

30 September 2017

131

1 reference

Europe PubMed Central

PMC publication ID

30 September 2017

22

1 reference

Europe PubMed Central

PMC publication ID

30 September 2017

7618-7625

1 reference

Europe PubMed Central

PMC publication ID

30 September 2017

A role for water molecules in DNA-ligand minor groove recognition

1 reference

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The dynamics of water at DNA interfaces: computational studies of Hoechst 33258 bound to DNA.

1 reference

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Antiparasitic compounds that target DNA.

1 reference

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P22 c2 repressor-operator complex: mechanisms of direct and indirect readout

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Water structure and interactions with protein surfaces

1 reference

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The role of water in protein-DNA recognition

1 reference

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Development and testing of a general amber force field

1 reference

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Characterization of a novel DNA minor-groove complex

1 reference

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1 October 2017

Water at DNA surfaces: ultrafast dynamics in minor groove recognition

1 reference

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1 October 2017

Strong binding in the DNA minor groove by an aromatic diamidine with a shape that does not match the curvature of the groove

1 reference

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Involvement of water in carbohydrate-protein binding.

1 reference

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1 October 2017

Induced fit DNA recognition by a minor groove binding analogue of Hoechst 33258: fluctuations in DNA A tract structure investigated by NMR and molecular dynamics simulations

1 reference

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1 reference

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1 reference

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1 reference

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1 October 2017

Crystal structure of trp repressor/operator complex at atomic resolution

1 reference

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1 October 2017

Isohelical analysis of DNA groove-binding drugs

1 reference

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Diphenyl furans and aza analogs: effects of structural modification on in vitro activity, DNA binding, and accumulation and distribution in trypanosomes

1 reference

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Water-mediated protein-DNA interactions: the relationship of thermodynamics to structural detail

1 reference

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19 August 2018

Out-of-shape DNA minor groove binders: induced fit interactions of heterocyclic dications with the DNA minor groove

1 reference

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Standard free energy of releasing a localized water molecule from the binding pockets of proteins: double-decoupling method.

1 reference

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19 August 2018

Molecular dynamics simulations and thermodynamics analysis of DNA-drug complexes. Minor groove binding between 4',6-diamidino-2-phenylindole and DNA duplexes in solution

1 reference

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Structure, DNA minor groove binding, and base pair specificity of alkyl- and aryl-linked bis(amidinobenzimidazoles) and bis(amidinoindoles)

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Heat capacity effects in protein folding and ligand binding: a re-evaluation of the role of water in biomolecular thermodynamics

1 reference

https://pubmed.ncbi.nlm.nih.gov/19445463

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/JA809249H

1 reference

Europe PubMed Central

PMC publication ID

30 September 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

30 September 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

30 September 2017

ResearchGate publication ID

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