Potent transcriptional interference by pausing of RNA polymerases over a downstream promoter (Q41451057)

30 September 2017

Potent transcriptional interference by pausing of RNA polymerases over a downstream promoter (English)

1 reference

30 September 2017

Adam C Palmer

1

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Keith E. Shearwin

object named as

Keith E Shearwin

5

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Ian B. Dodd

object named as

Ian B Dodd

4

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author name string

Alexandra Ahlgren-Berg

2

1 reference

PMCID

2697128

30 September 2017

J Barry Egan

3

1 reference

30 September 2017

1 June 2009

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30 September 2017

1 reference

30 September 2017

34

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30 September 2017

5

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30 September 2017

545-555

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PMCID

2697128

describes a project that uses

30 September 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2697128/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Evolution and functions of long noncoding RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

1 October 2017

1 reference

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Poised RNA polymerase II gives pause for thought

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

In vivo dynamics of RNA polymerase II transcription.

1 October 2017

1 reference

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

1 October 2017

1 reference

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Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum

1 October 2017

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Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference

1 October 2017

1 reference

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Repression of ADH1 and ADH3 during zinc deficiency by Zap1-induced intergenic RNA transcripts.

1 October 2017

1 reference

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The regulatory roles and mechanism of transcriptional pausing

1 October 2017

1 reference

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Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy

1 October 2017

1 reference

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A high-resolution map of transcription in the yeast genome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Rho-dependent transcription termination: more questions than answers

1 October 2017

1 reference

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Regulation of an intergenic transcript controls adjacent gene transcription in Saccharomyces cerevisiae.

1 October 2017

1 reference

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Antisense transcription in the mammalian transcriptome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Evidence for abundant transcription of non-coding regions in the Saccharomyces cerevisiae genome

1 October 2017

1 reference

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Transcriptional interference--a crash course

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Sequence-specific Rho-RNA interactions in transcription termination

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Transcriptional interference between convergent promoters caused by elongation over the promoter

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Toxicity of the bacteriophage lambda cII gene product to Escherichia coli arises from inhibition of host cell DNA replication

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Rho-dependent termination and ATPases in transcript termination

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Octamerization of lambda CI repressor is needed for effective repression of P(RM) and efficient switching from lysogeny

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Conditional-replication, integration, excision, and retrieval plasmid-host systems for gene structure-function studies of bacteria

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Transcriptional interference perturbs the binding of Sp1 to the HIV-1 promoter.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Independent and tight regulation of transcriptional units in Escherichia coli via the LacR/O, the TetR/O and AraC/I1-I2 regulatory elements

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Promoter for the establishment of repressor synthesis in bacteriophage lambda

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Role of cII protein in stimulating transcription initiation at the lambda PRE promoter. Enhanced formation and stabilization of open complexes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Promoter occlusion: Transcription through a promoter may inhibit its activity

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Transcription terminates at lambda tR1 in three clusters

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Purification and properties of a transcriptional activator. The cII protein of phage lambda

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Improved single and multicopy lac-based cloning vectors for protein and operon fusions

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Improved vector system for constructing transcriptional fusions that ensures independent translation of lacZ.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Convergent transcription in bacteriophage λ: Interference with gene expression

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Prevalence of RNA polymerase stalling at Escherichia coli promoters after open complex formation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Antisense transcription controls cell fate in Saccharomyces cerevisiae

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

The promoter-proximal rDNA terminator augments initiation by preventing disruption of the stable transcription complex caused by polymerase read-in.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

3'-End formation at the phage .lambda. tR1 .rho.-dependent transcription termination site

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Host factor requirements for processive antitermination of transcription and suppression of pausing by the N protein of bacteriophage lambda

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

A mathematical model for transcriptional interference by RNA polymerase traffic in Escherichia coli.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Dual role of boxB RNA motif in the mechanisms of termination/antitermination at the lambda tR1 terminator revealed in vivo

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

Cooperation between RNA polymerase molecules in transcription elongation

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2697128

RNA polymerase pausing and transcript release at the lambda tR1 terminator in vitro

19 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19524535

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Activities of constitutive promoters in Escherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19524535

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.MOLCEL.2009.04.018

1 reference

30 September 2017

1 reference

30 September 2017

1 reference

PMCID

2697128