CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site (Q41489469)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

title

CABS-dock web server for the flexible docking of peptides to proteins without prior knowledge of the binding site (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Mateusz Kurcinski

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

Sebastian Kmiecik

5

0 references

Andrzej Koliński

object named as

Andrzej Kolinski

series ordinal

4

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author name string

Maciej Blaszczyk

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

publication date

5 May 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

volume

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

issue

W1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

page(s)

W419-24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

7 March 2020

copyright license

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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11 June 2018

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CABS-flex predictions of protein flexibility compared with NMR ensembles.

11 June 2018

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CABS-fold: Server for the de novo and consensus-based prediction of protein structure

11 June 2018

1 reference

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CABS-flex: Server for fast simulation of protein structure fluctuations

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489223

A unified conformational selection and induced fit approach to protein-peptide docking

11 June 2018

1 reference

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Rosetta FlexPepDock web server--high resolution modeling of peptide-protein interactions

11 June 2018

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Simulation of chaperonin effect on protein folding: a shift from nucleation-condensation to framework mechanism

11 June 2018

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Analysis and optimization of interactions between peptides mimicking the GD2 ganglioside and the monoclonal antibody 14G2a

11 June 2018

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Theoretical study of molecular mechanism of binding TRAP220 coactivator to Retinoid X Receptor alpha, activated by 9-cis retinoic acid

11 June 2018

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Peptidic modulators of protein-protein interactions: progress and challenges in computational design

11 June 2018

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Comparative protein structure modeling using MODELLER

11 June 2018

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Characterization of protein-folding pathways by reduced-space modeling

11 June 2018

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Statistical potential for assessment and prediction of protein structures

11 June 2018

1 reference

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Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models.

11 June 2018

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Protein modeling and structure prediction with a reduced representation.

11 June 2018

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Efficient docking of peptides to proteins without prior knowledge of the binding site

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489223

Nativelike topology assembly of small proteins using predicted restraints in Monte Carlo folding simulations

11 June 2018

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

11 June 2018

1 reference

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Mechanism of Folding and Binding of an Intrinsically Disordered Protein As Revealed by ab Initio Simulations.

11 June 2018

1 reference

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Information-driven modeling of protein-peptide complexes.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489223

Sub-angstrom modeling of complexes between flexible peptides and globular proteins.

19 August 2018

1 reference

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JSmol and the Next-Generation Web-Based Representation of 3D Molecular Structure as Applied to Proteopedia

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV456

Steps towards flexible docking: modeling of three-dimensional structures of the nuclear receptors bound with peptide ligands mimicking co-activators' sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25943545

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKV456

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

1 reference

journals/nar/KurcinskiJBKK15

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json

7 March 2020

PubMed publication ID

25943545

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25943545%20AND%20SRC:MED&resulttype=core&format=json