Protein conformational substates from X-ray crystallography (Q41491581)

1 October 2017

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title

Protein conformational substates from X-ray crystallography (English)

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1 October 2017

X-ray crystallography

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Rejto PA

1

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PubMed ID

9175428

1 October 2017

Freer ST

series ordinal

2

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1 October 2017

1 January 1996

1 reference

Progress in Biophysics and Molecular Biology

1 October 2017

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1 October 2017

66

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1 October 2017

2

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1 October 2017

167-196

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Conformational relaxation and ligand binding in myoglobin.

1 October 2017

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Design of enzyme inhibitors using iterative protein crystallographic analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Investigation of domain motions in bacteriophage T4 lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystallographic studies of the dynamic properties of lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Dynamics of ligand binding to myoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Influenza hemagglutinin: kinetic control of protein function.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure of actinidin, after refinement at 1.7 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

The Protein Data Bank: a computer-based archival file for macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure of Hen Egg-White Lysozyme: A Three-dimensional Fourier Synthesis at 2 Å Resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Conformational Variability of Solution Nucelar Magnetic Resonance Structures

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Do NOE distances contain enough information to assess the relative populations of multi-conformer structures?

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Casting a cold eye over myoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystallographic refinement by simulated annealing. Application to a 2.8 A resolution structure of aspartate aminotransferase.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Free R value: a novel statistical quantity for assessing the accuracy of crystal structures

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Computational challenges for macromolecular structure determination by X-ray crystallography and solution NMR-spectroscopy

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Funnels, pathways, and the energy landscape of protein folding: a synthesis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystals of a fragment of influenza haemagglutinin in the low pH induced conformation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Direct observation of protein solvation and discrete disorder with experimental crystallographic phases

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

A spring-loaded mechanism for the conformational change of influenza hemagglutinin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Refinement of an enzyme complex with inhibitor bound at partial occupancy. Hen egg-white lysozyme and tri-N-acetylchitotriose at 1.75 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Flap opening in HIV-1 protease simulated by 'activated' molecular dynamics.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystal structure of cyclin-dependent kinase 2

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Principles of protein folding--a perspective from simple exact models.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure of a hinge-bending bacteriophage T4 lysozyme mutant, Ile3-->Pro

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structural effects induced by mutagenesis affected by crystal packing factors: the structure of a 30-51 disulfide mutant of basic pancreatic trypsin inhibitor

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Complexity in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Temperature-dependent X-ray diffraction as a probe of protein structural dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

The Energy Landscapes and Motions of Proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

FK506 binding protein mutational analysis. Defining the surface residue contributions to stability of the calcineurin co-complex

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Proteins and glasses: A relaxation study in the millikelvin range

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Large-amplitude nonlinear motions in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structural mechanisms for domain movements in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Inclusion of thermal motion in crystallographic structures by restrained molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Conformational changes in cubic insulin crystals in the pH range 7-11

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystal structure analyses of reduced (CuI) poplar plastocyanin at six pH values

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Real space refinement of neutron diffraction data from sperm whale carbonmonoxymyoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Stereochemically restrained refinement of macromolecular structures

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure of the hydrophobic protein crambin determined directly from the anomalous scattering of sulphur

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystalline mitochondrial aspartate aminotransferase exists in only two conformations

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Refinement of a molecular model for lamprey hemoglobin from Petromyzon marinus

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Anisotropy and anharmonicity of atomic fluctuations in proteins: analysis of a molecular dynamics simulation

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Anisotropy and anharmonicity of atomic fluctuations in proteins: implications for X-ray analysis.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure and internal mobility of proteins: a molecular dynamics study of hen egg white lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Molecular interactions in protein crystals: solvent accessible surface and stability

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure comparison of native and mutant human recombinant FKBP12 complexes with the immunosuppressant drug FK506 (tacrolimus).

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Comparison of three different crystal forms shows HIV-1 reverse transcriptase displays an internal swivel motion

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Normal mode refinement: crystallographic refinement of protein dynamic structure. II. Application to human lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Variability of conformations at crystal contacts in BPTI represent true low-energy structures: correspondence among lattice packing and molecular dynamics structures

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Temperature dependence of the structure and dynamics of myoglobin. A simulation approach

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystal structure of hen egg-white lysozyme at a hydrostatic pressure of 1000 atmospheres

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure-based strategies for drug design and discovery

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Exploration of disorder in protein structures by X-ray restrained molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Effect of anisotropy and anharmonicity on protein crystallographic refinement. An evaluation by molecular dynamics

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

X-ray structure and refinement of carbon-monoxy (Fe II)-myoglobin at 1.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Phe-46(CD4) orients the distal histidine for hydrogen bonding to bound ligands in sperm whale myoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystallographic studies of Savinase, a subtilisin-like proteinase, at pH 10.5.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Three-dimensional structure at 0.86 A of the uncomplexed form of the transmembrane ion channel peptide gramicidin A

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

X-ray analysis of HIV-1 proteinase at 2.7 A resolution confirms structural homology among retroviral enzymes

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Looking into the energy landscape of myoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Stereochemical mechanism of action for thymidylate synthase based on the X-ray structure of the covalent inhibitory ternary complex with 5-fluoro-2'-deoxyuridylate and 5,10-methylenetetrahydrofolate

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Manifestations of the tertiary structures of proteins in high-frequency nuclear magnetic resonance

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

X-ray structure refinement and comparison of three forms of mitochondrial aspartate aminotransferase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Specificity of ligand binding in a buried nonpolar cavity of T4 lysozyme: linkage of dynamics and structural plasticity

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystal structures of two mutants of adenylate kinase from Escherichia coli that modify the Gly-loop

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

A reassessment of the structure of chymotrypsin inhibitor 2 (CI-2) using time-averaged NMR restraints

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystal structure analysis of oxidized Pseudomonas aeruginosa azurin at pH 5.5 and pH 9.0. A pH-induced conformational transition involves a peptide bond flip

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystal structure of Pseudomonas aeruginosa apo-azurin at 1.85 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Flexibility and function in HIV-1 protease

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structures of the "open" and "closed" state of trypanosomal triosephosphate isomerase, as observed in a new crystal form: implications for the reaction mechanism

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Polypeptide conformational space. Dynamics by solution NMR disorder by X-ray crystallography

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Are time-averaged restraints necessary for nuclear magnetic resonance refinement? A model study for DNA.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Not just your average structures

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Fluctuations in Protein Structure from X-Ray Diffraction

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Comparison of the dynamics of myoglobin in different crystal forms

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure and refinement of oxymyoglobin at 1.6 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

A structural basis for the interaction of urea with lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Molecular dynamics simulations of native and substrate-bound lysozyme. A study of the average structures and atomic fluctuations

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

A molecular dynamics analysis of protein structural elements

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

High-resolution crystal structures of distal histidine mutants of sperm whale myoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Study of protein dynamics by X-ray diffraction

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Automatic identification of discrete substates in proteins: singular value decomposition analysis of time-averaged crystallographic refinements.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

How does a protein fold?

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Domain flexibility in aspartic proteinases

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Simultaneous refinement of the structure of BPTI against NMR data measured in solution and X-ray diffraction data measured in single crystals

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystal structure of photolysed carbonmonoxy-myoglobin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystallographic evidence of a large ligand-induced hinge-twist motion between the two domains of the maltodextrin binding protein involved in active transport and chemotaxis

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Phase annealing in SHELX-90: direct methods for larger structures

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structural heterogeneity in protein crystals

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure of Hen Lysozyme in Solution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Substitution of ASP193 to ASN at the active site of ribulose-1,5-bisphosphate carboxylase results in conformational changes

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Dynamic information from protein crystallography. An analysis of temperature factors from refinement of the hen egg-white lysozyme structure

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Multiple conformations of amino acid residues in ribonuclease A

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Contribution of hydrophobic residues to the stability of human lysozyme: calorimetric studies and X-ray structural analysis of the five isoleucine to valine mutants

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Primary structure of the hydrophobic plant protein crambin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Atomic resolution (0.83 A) crystal structure of the hydrophobic protein crambin at 130 K

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Photolysis-induced structural changes in single crystals of carbonmonoxy myoglobin at 40 K

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Protein conformational landscapes: energy minimization and clustering of a long molecular dynamics trajectory

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Atomic structure of FKBP-FK506, an immunophilin-immunosuppressant complex

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Accounting for molecular mobility in structure determination based on nuclear magnetic resonance spectroscopic and X-ray diffraction data

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure-based drug design: progress, results and challenges

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Movie of the structural changes during a catalytic cycle of nucleoside monophosphate kinases

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

The importance of being floppy

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

An all atom force field for simulations of proteins and nucleic acids

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

X-ray structures of two single-residue mutants of DNase I: H134Q and Y76A.

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Alternative native flap conformation revealed by 2.3 A resolution structure of SIV proteinase

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Comparison of two highly refined structures of bovine pancreatic trypsin inhibitor

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure-based inhibitors of HIV-1 protease

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Structure of phosphate-free ribonuclease A refined at 1.26 .ANG

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

2.2 A resolution structure analysis of two refined N-acetylneuraminyl-lactose--wheat germ agglutinin isolectin complexes

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Crystal structures of CO-, deoxy- and met-myoglobins at various pH values

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Molecular dynamics simulation of HIV-1 protease in a crystalline environment and in solution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Activity of the MAP kinase ERK2 is controlled by a flexible surface loop

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Multiple alanine replacements within α‐helix 126–134 of T4 lysozyme have independent, additive effects on both structure and stability

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Protein flexibility and adaptability seen in 25 crystal forms of T4 lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

Conformational interconversion in protein crystals

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

The structure of 2Zn pig insulin crystals at 1.5 A resolution

1 reference

https://api.crossref.org/works/10.1016%2FS0079-6107%2897%2985629-5

7 January 2021

The treatment of errors in the isomorphous replacement method

1 reference

19 October 2022

https://opencitations.net/index/coci/api/v1/citations/10.1107/S0365110X59002274

Identifiers

DOI

10.1016/S0079-6107(97)85629-5

1 reference

1 October 2017

1 reference

PubMed ID

9175428