Nuclear matrix, dynamic histone acetylation and transcriptionally active chromatin (Q41589657)

4 October 2017

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title

Nuclear matrix, dynamic histone acetylation and transcriptionally active chromatin (English)

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4 October 2017

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Davie JR

1

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4 October 2017

publication date

1 August 1997

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Molecular Biology Reports

4 October 2017

published in

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4 October 2017

volume

24

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4 October 2017

issue

3

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4 October 2017

page(s)

197-207

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Specific binding of MAR/SAR DNA-elements by mutant p53.

4 October 2017

cites work

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12 December 2020

The KRAB zinc finger gene ZNF74 encodes an RNA-binding protein tightly associated with the nuclear matrix

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12 December 2020

RFP is a DNA binding protein associated with the nuclear matrix

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12 December 2020

Rapid histone H3 phosphorylation in response to growth factors, phorbol esters, okadaic acid, and protein synthesis inhibitors

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12 December 2020

HDA1 and HDA3 are components of a yeast histone deacetylase (HDA) complex

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12 December 2020

Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast

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12 December 2020

Replication and transcription sites are colocalized in human cells

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12 December 2020

Histone acetylation in chicken erythrocytes. Rates of deacetylation in immature and mature red blood cells

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12 December 2020

Properties of the yeast nuclear histone deacetylase.

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12 December 2020

Histone H4 acetylation distinguishes coding regions of the human genome from heterochromatin in a differentiation-dependent but transcription-independent manner

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12 December 2020

Points of contact between histone H1 and the histone octamer

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12 December 2020

Association of nuclear matrix antigens with exon-containing splicing complexes

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12 December 2020

Nuclear Matrix Protein ARBP Recognizes a Novel DNA Sequence Motif with High Affinity

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12 December 2020

Histone deacetylase is a component of the internal nuclear matrix

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12 December 2020

Multiple functions of dynamic histone acetylation

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12 December 2020

A proposal for a coherent mammalian histone H1 nomenclature correlated with amino acid sequences.

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12 December 2020

The effect of nucleosome phasing sequences and DNA topology on nucleosome spacing.

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12 December 2020

Identification within the simian virus 40 genome of a chromosomal loop attachment site that contains topoisomerase II cleavage sites

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12 December 2020

Cell cycle-dependent changes in conformation and composition of nucleosomes containing human histone gene sequences

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12 December 2020

Histone acetylation and gene induction in human cells

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12 December 2020

Interaction of the co-activator CBP with Myb proteins: effects on Myb-specific transactivation and on the cooperativity with NF-M

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12 December 2020

A novel DNA-binding motif in the nuclear matrix attachment DNA-binding protein SATB1

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12 December 2020

The bromodomain: a conserved sequence found in human, Drosophila and yeast proteins

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12 December 2020

Identification of a gene encoding a yeast histone H4 acetyltransferase

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12 December 2020

Bladder cancer-associated nuclear matrix proteins

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12 December 2020

A chromatin folding model that incorporates linker variability generates fibers resembling the native structures

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12 December 2020

The sequence-specific nuclear matrix binding factor F6 is a chicken GATA-like protein

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12 December 2020

A chromomeric model for nuclear and chromosome structure.

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12 December 2020

Interaction of RNA polymerase II with structurally altered nucleosomal particles. Transcription is facilitated by loss of one H2A.H2B dimer.

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12 December 2020

Sequence-specific DNA-binding proteins are components of a nuclear matrix-attachment site

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12 December 2020

The SWI-SNF complex: a chromatin remodeling machine?

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12 December 2020

Level of ubiquitinated histone H2B in chromatin is coupled to ongoing transcription

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12 December 2020

Core histone acetylation does not block linker histone binding to a nucleosome including a Xenopus borealis 5 S rRNA gene

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12 December 2020

A mammalian histone deacetylase related to the yeast transcriptional regulator Rpd3p

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12 December 2020

Anatomy of highly expressing chromosomal sites targeted by retroviral vectors

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12 December 2020

Histone acetylation in chicken erythrocytes. Rates of acetylation and evidence that histones in both active and potentially active chromatin are rapidly modified

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12 December 2020

Chromatin organization re-viewed

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12 December 2020

RPD3 encodes a second factor required to achieve maximum positive and negative transcriptional states in Saccharomyces cerevisiae

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12 December 2020

Nucleosomal structure at hyperacetylated loci probed in nuclei by DNA-histone crosslinking

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12 December 2020

The amino-terminal region of the retinoblastoma gene product binds a novel nuclear matrix protein that co-localizes to centers for RNA processing

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12 December 2020

Effects of histone acetylation, ubiquitination and variants on nucleosome stability

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12 December 2020

Selective use of H4 acetylation sites in the yeast Saccharomyces cerevisiae

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12 December 2020

The nuclear matrix and the regulation of chromatin organization and function

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12 December 2020

Properties of chicken erythrocyte histone deacetylase associated with the nuclear matrix

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12 December 2020

Patterns of histone acetylation

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12 December 2020

Binding of matrix attachment regions to lamin B1

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12 December 2020

Nuclear matrix proteins in human colon cancer

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12 December 2020

Histone H4 acetylation in human cells. Frequency of acetylation at different sites defined by immunolabeling with site-specific antibodies

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12 December 2020

Site specificity of pea histone acetyltransferase B in vitro

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12 December 2020

Histone deacetylase: a regulator of transcription

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12 December 2020

Nuclear factor 1 is a component of the nuclear matrix

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12 December 2020

Sodium butyrate stimulation of HIV-1 gene expression: a novel mechanism of induction independent of NF-kappa B

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12 December 2020

RNA polymerase II transcription and the functional organization of the mammalian cell nucleus

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12 December 2020

The nuclear matrix: a heuristic model for investigating genomic organization and function in the cell nucleus

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12 December 2020

The SV40 large T antigen and adenovirus E1a oncoproteins interact with distinct isoforms of the transcriptional co-activator, p300.

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12 December 2020

Nucleosome fractionation by mercury affinity chromatography. Contrasting distribution of transcriptionally active DNA sequences and acetylated histones in nucleosome fractions of wild-type yeast cells and cells expressing a histone H3 gene altered t

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12 December 2020

The histone fold: a ubiquitous architectural motif utilized in DNA compaction and protein dimerization

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12 December 2020

Modulation of chromatin folding by histone acetylation

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12 December 2020

Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken beta-globin chromosomal domain.

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12 December 2020

Histone acetylation in baker's yeast. Maintenance of the hyperacetylated configuration in log phase protoplasts

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12 December 2020

Transcribed chromatin

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12 December 2020

Chromatin dynamics and the modulation of genetic activity

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12 December 2020

Mice develop normally without the H1(0) linker histone

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12 December 2020

Linker histones are not essential and affect chromatin condensation in vivo

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12 December 2020

In vivo analysis of the stability and transport of nuclear poly(A)+ RNA.

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12 December 2020

Rethinking cell structure

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12 December 2020

A highly basic histone H4 domain bound to the sharply bent region of nucleosomal DNA

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12 December 2020

Activation of the mouse cytokeratin A (endo A) gene in teratocarcinoma F9 cells by the histone deacetylase inhibitor Trichostatin A

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12 December 2020

Chromatin architecture and nuclear RNA

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12 December 2020

The RNA polymerase II elongation complex

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12 December 2020

Micronuclei and the cytoplasm of growing Tetrahymena contain a histone acetylase activity which is highly specific for free histone H4

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12 December 2020

ISWI, a member of the SWI2/SNF2 ATPase family, encodes the 140 kDa subunit of the nucleosome remodeling factor

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12 December 2020

Nuclear matrix proteins reflect cell type of origin in cultured human cells

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12 December 2020

What happens to nucleosomes during transcription?

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12 December 2020

The chicken lysozyme gene 5' MAR and the Drosophila histone SAR are electroelutable from encapsulated and digested nuclei

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12 December 2020

Altered nuclear matrix protein profiles in oncogene-transformed mouse fibroblasts exhibiting high metastatic potential

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12 December 2020

Low levels of exogenous histone H1 in yeast cause cell death.

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12 December 2020

A positive role for histone acetylation in transcription factor access to nucleosomal DNA

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12 December 2020

Tetrahymena histone acetyltransferase A: a homolog to yeast Gcn5p linking histone acetylation to gene activation

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12 December 2020

A comprehensive study on the isolation and characterization of the HeLa S3 nuclear matrix

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12 December 2020

Transcription factor-mediated chromatin remodelling: mechanisms and models.

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12 December 2020

Nuclear matrix proteins in normal and breast cancer cells

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12 December 2020

Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4.

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12 December 2020

The architectural organization of nuclear metabolism

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12 December 2020

Intranuclear compartmentalization of transcribed and nontranscribed c-myc sequences in Namalva-S cells

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12 December 2020

Histone H5 in the control of DNA synthesis and cell proliferation

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12 December 2020

A mammalian SRB protein associated with an RNA polymerase II holoenzyme

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12 December 2020

The separation of transcriptionally engaged genes

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12 December 2020

Three-dimensional structure of extended chromatin fibers as revealed by tapping-mode scanning force microscopy

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12 December 2020

Reversible and irreversible changes in nucleosome structure along the c-fos and c-myc oncogenes following inhibition of transcription

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12 December 2020

The retinoblastoma gene product is a cell cycle-dependent, nuclear matrix-associated protein

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12 December 2020

Hypothesis: RNA polymerase: Structural determinat of the chromatin loop and the chromosome

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12 December 2020

The size of chromatin loops in HeLa cells

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12 December 2020

Nucleosome linking number change controlled by acetylation of histones H3 and H4.

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12 December 2020

A CBP integrator complex mediates transcriptional activation and AP-1 inhibition by nuclear receptors

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12 December 2020

Visualization of a filamentous nucleoskeleton with a 23 nm axial repeat.

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12 December 2020

Modulation of the higher-order folding of chromatin by deletion of histone H3 and H4 terminal domains.

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12 December 2020

Reversible oligonucleosome self-association: dependence on divalent cations and core histone tail domains

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12 December 2020

Rapid and reversible changes in nucleosome structure accompany the activation, repression, and superinduction of murine fibroblast protooncogenes c-fos and c-myc

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12 December 2020

A human RNA polymerase II complex associated with SRB and DNA-repair proteins

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12 December 2020

Nuclear architecture supports integration of physiological regulatory signals for transcription of cell growth and tissue-specific genes during osteoblast differentiation

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12 December 2020

Stimulation of tissue-type plasminogen activator gene expression by sodium butyrate and trichostatin A in human endothelial cells involves histone acetylation

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12 December 2020

Scaffold/matrix-attached regions: structural properties creating transcriptionally active loci.

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12 December 2020

Changes in the nuclear matrix of chicken erythrocytes that accompany maturation

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12 December 2020

Sodium butyrate inhibits myogenesis by interfering with the transcriptional activation function of MyoD and myogenin

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12 December 2020

Developmental changes in transcription factors associated with the nuclear matrix of chicken erythrocytes.

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12 December 2020

Histone acetylation alters the capacity of the H1 histones to condense transcriptionally active/competent chromatin

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12 December 2020

A retinoblastoma-binding protein related to a negative regulator of Ras in yeast

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12 December 2020

Factors affecting nucleosome structure in transcriptionally active chromatin. Histone acetylation, nascent RNA and inhibitors of RNA synthesis

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12 December 2020

Inhibition of transcription selectively reduces the level of ubiquitinated histone H2B in chromatin

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12 December 2020

Histone acetyltransferase is associated with the nuclear matrix

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12 December 2020

Histones associated with non-nucleosomal rat ribosomal genes are acetylated while those bound to nucleosome-organized gene copies are not.

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12 December 2020

Active RNA polymerases are localized within discrete transcription "factories' in human nuclei

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12 December 2020

Regulation of transcription-factor activity during growth and differentiation: involvement of the nuclear matrix in concentration and localization of promoter binding proteins

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12 December 2020

Progressive changes in the protein composition of the nuclear matrix during rat osteoblast differentiation

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12 December 2020

Nuclear distribution of histone deacetylase: a marker enzyme for the internal nuclear matrix

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12 December 2020

The identification of distinct populations of acetylated histone

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12 December 2020

The tissue-specific nuclear matrix protein, NMP-2, is a member of the AML/CBF/PEBP2/runt domain transcription factor family: interactions with the osteocalcin gene promoter

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12 December 2020

Non-random acetylation of histone H4 by a cytoplasmic histone acetyltransferase as determined by novel methodology.

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12 December 2020

Malignancy-associated changes in the breast. Changes in chromatin distribution in epithelial cells in normal-appearing tissue adjacent to carcinoma

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12 December 2020

Repression domain of the yeast global repressor Tup1 interacts directly with histones H3 and H4.

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12 December 2020

Relationship between core histone acetylation and histone H1(0) gene activity

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12 December 2020

Transcriptional silencing in yeast is associated with reduced nucleosome acetylation

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12 December 2020

Visualization of replication factories attached to nucleoskeleton

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12 December 2020

Dynamic changes in the higher-level chromatin organization of specific sequences revealed by in situ hybridization to nuclear halos

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12 December 2020

Scaffold-associated regions: cis-acting determinants of chromatin structural loops and functional domains

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12 December 2020

Nonrandom gene organization: structural arrangements of specific pre-mRNA transcription and splicing with SC-35 domains

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12 December 2020

Histone modifications in the yeast S. Cerevisiae

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12 December 2020

Histone hyperacetylation: its effects on nucleosome conformation and stability

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12 December 2020

Overcoming a nucleosomal barrier to transcription

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12 December 2020

Trichostatin A and trapoxin: novel chemical probes for the role of histone acetylation in chromatin structure and function

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12 December 2020

Nonrandom utilization of acetylation sites in histones isolated from Tetrahymena. Evidence for functionally distinct H4 acetylation sites

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12 December 2020

Role of the histone amino termini in facilitated binding of a transcription factor, GAL4-AH, to nucleosome cores

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12 December 2020

Evidence indicating proximity in the nucleosome between the histone H4 N termini and the globular domain of histone H1

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12 December 2020

Detection of nuclear matrix proteins in serum from cancer patients

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12 December 2020

A matrix attachment region (MAR)-binding activity due to a p114 kilodalton protein is found only in human breast carcinomas and not in normal and benign breast disease tissues

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12 December 2020

Mitogen-stimulated phosphorylation of histone H3 is targeted to a small hyperacetylation-sensitive fraction

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12 December 2020

Selective synthesis and modification of nuclear proteins during maturation of avian erythroid cells

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12 December 2020

Electrostatic mechanism of nucleosome spacing.

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12 December 2020

An activity gel assay detects a single, catalytically active histone acetyltransferase subunit in Tetrahymena macronuclei

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12 December 2020

Targeted disruption of 01H1 encoding a particular H1 histone variant causes changes in protein patterns in the DT40 chicken B cell line

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12 December 2020

Special HATs for special occasions: linking histone acetylation to chromatin assembly and gene activation

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12 December 2020

Nuclear matrix protein patterns in human benign prostatic hyperplasia and prostate cancer

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12 December 2020

Differential compaction of transcriptionally competent and repressed chromatin reconstituted with histone H1 subtypes.

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12 December 2020

Ultrastructural localization of active genes in nuclei of A431 cells

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12 December 2020

Hyperacetylation of core histones does not cause unfolding of nucleosomes. Neutron scatter data accords with disc shape of the nucleosome.

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12 December 2020

Visualization and analysis of unfolded nucleosomes associated with transcribing chromatin

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12 December 2020

Nuclear matrix association of multiple sequence-specific DNA binding activities related to SP-1, ATF, CCAAT, C/EBP, OCT-1, and AP-1.

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12 December 2020

The nuclear matrix from cells of different origin. Evidence for a common set of matrix proteins

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12 December 2020

A search for proteins that interact genetically with histone H3 and H4 amino termini uncovers novel regulators of the Swe1 kinase in Saccharomyces cerevisiae

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12 December 2020

Sequence‐specific DNA binding activities of nuclear matrix proteins of mammalian lens epithelial cells

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12 December 2020

RNA polymerase II holoenzyme contains SWI/SNF regulators involved in chromatin remodeling

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12 December 2020

Domains of the human androgen receptor and glucocorticoid receptor involved in binding to the nuclear matrix

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12 December 2020

Histone H4 from cuttlefish testis is sequentially acetylated. Comparison with acetylation of calf thymus histone H4

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12 December 2020

Histone hyperacetylation is accompanied by changes in DNA topology in vivo

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12 December 2020

Visualization of focal sites of transcription within human nuclei.

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12 December 2020

Identifiers

DOI

10.1023/A:1006811817247

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Dimensions Publication ID

4 October 2017

1000072241

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