EMBuilder: A Template Matching-based Automatic Model-building Program for High-resolution Cryo-Electron Microscopy Maps. (Q41597720)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28572576%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

title

EMBuilder: A Template Matching-based Automatic Model-building Program for High-resolution Cryo-Electron Microscopy Maps (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28572576%20AND%20SRC:MED&resulttype=core&format=json

cryogenic electron microscopy

21 March 2020

main subject

0 references

author

Niyun Zhou

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28572576%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

author name string

Hongwei Wang

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28572576%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Jiawei Wang

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28572576%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

language of work or name

English

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publication date

1 June 2017

1 reference

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21 March 2020

1 reference

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21 March 2020

volume

7

1 reference

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21 March 2020

issue

1

1 reference

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21 March 2020

page(s)

2664

1 reference

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Creative Commons Attribution 4.0 International

21 March 2020

copyright license

start time

1 June 2017

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Tools for Model Building and Optimization into Near-Atomic Resolution Electron Cryo-Microscopy Density Maps

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

De Novo modeling in cryo-EM density maps with Pathwalking

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Breaking Cryo-EM Resolution Barriers to Facilitate Drug Discovery.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Molecular mechanism of APC/C activation by mitotic phosphorylation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Using Cryo-EM to Map Small Ligands on Dynamic Metabolic Enzymes: Studies with Glutamate Dehydrogenase.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Structure of the eukaryotic replicative CMG helicase suggests a pumpjack motion for translocation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

2.3 Å resolution cryo-EM structure of human p97 and mechanism of allosteric inhibition

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

EMDataBank unified data resource for 3DEM.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

An atomic structure of human γ-secretase

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

2.2 Å resolution cryo-EM structure of β-galactosidase in complex with a cell-permeant inhibitor

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

De novo protein structure determination from near-atomic-resolution cryo-EM maps

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

EM-fold: de novo atomic-detail protein structure determination from medium-resolution density maps

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Generalized fragment picking in Rosetta: design, protocols and applications

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Modeling protein structure at near atomic resolutions with Gorgon

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Features and development of Coot

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Detecting folding motifs and similarities in protein structures

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Fitting molecular fragments into electron density

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

The Buccaneer software for automated model building. 1. Tracing protein chains

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

The new CCP4 Coordinate Library as a toolkit for the design of coordinate-related applications in protein crystallography.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Towards complete validated models in the next generation of ARP/wARP

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Maximum-likelihood density modification using pattern recognition of structural motifs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Fast Fourier feature recognition

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Fitting atomic models into electron-microscopy maps

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

6 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Crystal structures of myoglobin-ligand complexes at near-atomic resolution

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

Creating protein models from electron-density maps using particle-filtering methods

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5453991

The Resolution Revolution

19 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FS41598-017-02725-W

Combining Electron Microscopic with X-Ray Crystallographic Structures

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28572576

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Automatic modeling of protein backbones in electron-density maps via prediction of Calpha coordinates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28572576

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/S41598-017-02725-W

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28572576%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28572576%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

PubMed publication ID

28572576

1 reference