Structural basis of transcription arrest by coliphage HK022 Nun in an Escherichia coli RNA polymerase elongation complex. (Q41598589)

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12 March 2020

title

Structural basis of transcription arrest by coliphage HK022 Nun in an Escherichia coli RNA polymerase elongation complex (English)

1 reference

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12 March 2020

1 reference

4

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12 March 2020

Seth A Darst

8

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12 March 2020

author name string

Jin Young Kang

1

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12 March 2020

Paul Dominic B Olinares

2

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12 March 2020

James Chen

3

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12 March 2020

Arkady Mustaev

5

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12 March 2020

Brian T Chait

6

1 reference

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12 March 2020

Max E Gottesman

7

1 reference

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12 March 2020

language of work or name

English

0 references

publication date

20 March 2017

1 reference

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12 March 2020

1 reference

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12 March 2020

volume

6

1 reference

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NusG inhibits RNA polymerase backtracking by stabilizing the minimal transcription bubble

12 March 2020

cites work

1 reference

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6 June 2018

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6 June 2018

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6 June 2018

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6 June 2018

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6 June 2018

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6 June 2018

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6 June 2018

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Phage T7 Gp2 inhibition of Escherichia coli RNA polymerase involves misappropriation of 70 domain 1.1

6 June 2018

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6 June 2018

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6 June 2018

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Structural basis of transcription initiation

6 June 2018

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RELION: implementation of a Bayesian approach to cryo-EM structure determination

6 June 2018

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A novel method for the production of in vivo-assembled, recombinant Escherichia coli RNA polymerase lacking the α C-terminal domain

6 June 2018

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6 June 2018

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MolProbity: all-atom structure validation for macromolecular crystallography

6 June 2018

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Molecular evolution of multisubunit RNA polymerases: sequence analysis

6 June 2018

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Molecular evolution of multisubunit RNA polymerases: structural analysis

6 June 2018

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Structural Basis of Transcription: Backtracked RNA Polymerase II at 3.4 Angstrom Resolution

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

Overexpression of phage HK022 Nun protein is toxic for Escherichia coli

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

Structural basis for transcription elongation by bacterial RNA polymerase

6 June 2018

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Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase

6 June 2018

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The role of the lid element in transcription by E. coli RNA polymerase

6 June 2018

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EMAN2: an extensible image processing suite for electron microscopy

6 June 2018

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Automated electron microscope tomography using robust prediction of specimen movements

6 June 2018

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Protein production by auto-induction in high density shaking cultures

6 June 2018

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6 June 2018

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Structural basis of transcription: separation of RNA from DNA by RNA polymerase II

6 June 2018

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Donation of catalytic residues to RNA polymerase active center by transcription factor Gre

6 June 2018

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Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase

6 June 2018

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Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase

6 June 2018

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Role of E.coli transcription-repair coupling factor Mfd in Nun-mediated transcription termination

6 June 2018

1 reference

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The structure of the coliphage HK022 Nun protein-lambda-phage boxB RNA complex. Implications for the mechanism of transcription termination

6 June 2018

1 reference

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Antitermination in bacteriophage lambda. The structure of the N36 peptide-boxB RNA complex

6 June 2018

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The carboxyl terminus of phage HK022 Nun includes a novel zinc-binding motif and a tryptophan required for transcription termination.

6 June 2018

1 reference

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Constitutive expression of a transcription termination factor by a repressed prophage: promoters for transcribing the phage HK022 nun gene

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

Escherichia coli NusA is required for efficient RNA binding by phage HK022 nun protein

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

The Nun protein of bacteriophage HK022 inhibits translocation of Escherichia coli RNA polymerase without abolishing its catalytic activities

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

Translational repression by a transcriptional elongation factor

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

Interaction between the phage HK022 Nun protein and the nut RNA of phage lambda

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

The remarkable specificity of a new transcription termination factor suggests that the mechanisms of termination and antitermination are similar.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

Attachment of nascent RNA molecules to superhelical DNA

6 June 2018

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CTFFIND4: Fast and accurate defocus estimation from electron micrographs.

6 June 2018

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Attractive interactions between side chains of histidine-histidine and histidine-arginine-based cationic dipeptides in water

19 August 2018

1 reference

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Regulation of transcription: from lambda to eukaryotes

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

Transcription termination by phage HK022 Nun is facilitated by COOH-terminal lysine residues

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

Binding of transcription termination protein nun to nascent RNA and template DNA.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5386594

Phage HK022 Nun protein arrests transcription on phage lambda DNA in vitro and competes with the phage lambda N antitermination protein.

19 August 2018

1 reference

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Mechanistic model of the elongation complex of Escherichia coli RNA polymerase

19 August 2018

1 reference

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Antitermination in bacteriophage λ

4 November 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.25478

Escherichia coli mutations that block transcription termination by phage HK022 Nun protein

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28318486

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identification of functional regions of the Nun transcription termination protein of phage HK022 and the N antitermination protein of phage lambda using hybrid nun-N genes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28318486

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The role of the largest RNA polymerase subunit lid element in preventing the formation of extended RNA-DNA hybrid

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28318486

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.25478

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28318486%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28318486%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

PubMed publication ID

28318486

1 reference