Building the avian tree of life using a large-scale, sparse supermatrix (Q41637989)

5 October 2017

title

Building the avian tree of life using a large-scale, sparse supermatrix (English)

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5 October 2017

3

1 reference

5 October 2017

Rebecca T Kimball

2

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J. Gordon Burleigh

series ordinal

1

object named as

J Gordon Burleigh

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5 October 2017

publication date

27 December 2014

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Molecular Phylogenetics and Evolution

5 October 2017

number of pages

11

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based on heuristic

inferred from page(s)

published in

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5 October 2017

volume

84

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5 October 2017

page(s)

53-63

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Basic local alignment search tool

5 October 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Genomic Support for a Moa-Tinamou Clade and Adaptive Morphological Convergence in Flightless Ratites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenetic relationships and divergence times of Charadriiformes genera: multigene evidence for the Cretaceous origin of at least 14 clades of shorebirds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

A phylogenetic hypothesis for passerine birds: taxonomic and biogeographic implications of an analysis of nuclear DNA sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogeny and diversification of the largest avian radiation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

The evolution of supertrees.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

The (Super)Tree of Life: Procedures, Problems, and Prospects

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

The delayed rise of present-day mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Examining Basal Avian Divergences with Mitochondrial Sequences: Model Complexity, Taxon Sampling, and Sequence Length

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Homoplastic microinversions and the avian tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

A species-level phylogenetic supertree of marsupials

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

The merging of community ecology and phylogenetic biology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenetic affinities of evolutionarily enigmatic African galliforms: the Stone PartridgePtilopachus petrosusand Nahan's FrancolinFrancolinus nahani,and support for their sister relationship with New World quails

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Reweaving the tapestry: a supertree of birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenomics and the reconstruction of the tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Darwinian shortfalls in biodiversity conservation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Prospects for building the tree of life from large sequence databases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Patterns of research effort in birds.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

MUSCLE: multiple sequence alignment with high accuracy and high throughput

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

The relevance of phylogeny to studies of global change

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Is a new and general theory of molecular systematics emerging?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenetic analysis of community assembly and structure over space and time

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Diversification of Neoaves: integration of molecular sequence data and fossils

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Dating the diversification of the major lineages of Passeriformes (Aves).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

The NCBI Taxonomy database

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Confidence Limits on Phylogenies: an Approach using the Bootstrap

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Preserving the evolutionary potential of floras in biodiversity hotspots

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Combined support for wholesale taxic atavism in gavialine crocodylians

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

A phylogenomic study of birds reveals their evolutionary history

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Multiple nuclear genes and retroposons support vicariance and dispersal of the palaeognaths, and an Early Cretaceous origin of modern birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Are transposable element insertions homoplasy free?: an examination using the avian tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenomic evidence for multiple losses of flight in ratite birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

An update of Wallace's zoogeographic regions of the world

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenomics: the beginning of incongruence?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

The global diversity of birds in space and time

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Global distribution and conservation of evolutionary distinctness in birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Does more sequence data improve estimates of galliform phylogeny? Analyses of a rapid radiation using a complete data matrix

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

MAFFT version 5: improvement in accuracy of multiple sequence alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Identifying localized biases in large datasets: a case study using the avian tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Comment on "An update of Wallace's zoogeographic regions of the world".

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

A simple polytomy resolver for dated phylogenies

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Molecular and morphological supertrees for eutherian (placental) mammals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Gene Trees in Species Trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Retroposon insertion patterns of neoavian birds: strong evidence for an extensive incomplete lineage sorting era

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Applications of next-generation sequencing to phylogeography and phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Incongruence among different mitochondrial regions: a case study using complete mitogenomes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogeny and Biogeography of the Core Babblers (Aves: Timaliidae)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Multiple Sequence Alignment Accuracy and Phylogenetic Inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Microevolutionary processes generate phylogenomic discordance at ancient divergences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Density-dependent cladogenesis in birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Tinamous and moa flock together: mitochondrial genome sequence analysis reveals independent losses of flight among ratites

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Birds in a bush: five genes indicate explosive evolution of avian orders

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Empirical evaluation of partitioning schemes for phylogenetic analyses of mitogenomic data: an avian case study.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Rates of speciation and morphological evolution are correlated across the largest vertebrate radiation.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Estimating diversification rates from phylogenetic information

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Impact of missing data on phylogenies inferred from empirical phylogenomic data sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenetic signal in the eukaryotic tree of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenetic supertrees: Assembling the trees of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenomics with incomplete taxon coverage: the limits to inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Terraces in phylogenetic tree space

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Multi-locus phylogenetic analysis of Old World chats and flycatchers reveals extensive paraphyly at family, subfamily and genus level (Aves: Muscicapidae)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Ratite nonmonophyly: independent evidence from 40 novel Loci

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Analyzing and synthesizing phylogenies using tree alignment graphs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylogenetic relationships and character evolution analysis of Saxifragales using a supermatrix approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

PASTIS: an R package to facilitate phylogenetic assembly with soft taxonomic inferences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa, and the phylogeny of living turtles

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Disparity in the timing of vertebrate diversification events between the northern and southern hemispheres

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Adding time-calibrated branch lengths to the Asteraceae supertree

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Emerging patterns in the comparative analysis of phylogenetic community structure.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Taxonomic misidentification in public DNA databases

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Testing hypotheses about the sister group of the passeriformes using an independent 30-locus data set.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Assessing phylogenetic relationships among galliformes: a multigene phylogeny with expanded taxon sampling in Phasianidae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Phylomatic: tree assembly for applied phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Molecular phylogenetics: principles and practice

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

Parsimony and model-based analyses of indels in avian nuclear genes reveal congruent and incongruent phylogenetic signals

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2014.12.003

10.1016/J.YMPEV.2014.12.003

7 January 2021

Identifiers

DOI

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release_44mzpuoo3jgkhj7mlh7zwjllzi

5 October 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/44mzpuoo3jgkhj7mlh7zwjllzi

mapped directly with Wikidata item

24 November 2022

based on heuristic

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