Revisiting biomarker discovery by plasma&#160;proteomics. (Q41676452)

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31 March 2020

1 reference

25 November 2020

Revisiting biomarker discovery by plasma proteomics (English)

1 reference

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1 reference

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31 March 2020

author name string

Philipp E Geyer

series ordinal

1

1 reference

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31 March 2020

Lesca M Holdt

series ordinal

2

1 reference

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31 March 2020

Daniel Teupser

series ordinal

3

1 reference

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31 March 2020

publication date

26 September 2017

4 references

27 November 2019

21 December 2019

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31 March 2020

25 November 2020

Molecular Systems Biology

4 references

27 November 2019

21 December 2019

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31 March 2020

25 November 2020

13

1 reference

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31 March 2020

issue

9

1 reference

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31 March 2020

page(s)

942

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Creative Commons Attribution

31 March 2020

copyright license

3 references

27 November 2019

21 December 2019

25 November 2020

0 references

Statistical control of peptide and protein error rates in large-scale targeted data-independent acquisition analyses

1 reference

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Deep-Dive Targeted Quantification for Ultrasensitive Analysis of Proteins in Nondepleted Human Blood Plasma/Serum and Tissues.

6 June 2018

1 reference

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New diagnostic tests: more harm than good

6 June 2018

1 reference

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An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes

6 June 2018

1 reference

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CombiROC: an interactive web tool for selecting accurate marker combinations of omics data.

6 June 2018

1 reference

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Towards reproducible MRM based biomarker discovery using dried blood spots

6 June 2018

1 reference

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The Plasma Proteome Is Associated with Anthropometric Status of Undernourished Nepalese School-Aged Children

6 June 2018

1 reference

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Proteomics reveals the effects of sustained weight loss on the human plasma proteome

6 June 2018

1 reference

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The Human Phenotype Ontology in 2017

6 June 2018

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Mass-spectrometric exploration of proteome structure and function

6 June 2018

1 reference

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MetaPro-IQ: a universal metaproteomic approach to studying human and mouse gut microbiota

6 June 2018

1 reference

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Plasma Proteome Profiling to Assess Human Health and Disease

6 June 2018

1 reference

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Large-scale inference of protein tissue origin in gram-positive sepsis plasma using quantitative targeted proteomics

6 June 2018

1 reference

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Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays

6 June 2018

1 reference

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Plasma Proteome Biomarkers of Inflammation in School Aged Children in Nepal

6 June 2018

1 reference

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Proteomic Biomarker Discovery in 1000 Human Plasma Samples with Mass Spectrometry.

6 June 2018

1 reference

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Cell type- and brain region-resolved mouse brain proteome.

6 June 2018

1 reference

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Qualification and Verification of Serological Biomarker Candidates for Lung Adenocarcinoma by Targeted Mass Spectrometry

6 June 2018

1 reference

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Applications of targeted proteomics in systems biology and translational medicine

6 June 2018

1 reference

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Validation of new cancer biomarkers: a position statement from the European group on tumor markers

6 June 2018

1 reference

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Multiplexed, Quantitative Workflow for Sensitive Biomarker Discovery in Plasma Yields Novel Candidates for Early Myocardial Injury.

6 June 2018

1 reference

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Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma.

6 June 2018

1 reference

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Quantitative variability of 342 plasma proteins in a human twin population

6 June 2018

1 reference

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Using data-independent, high-resolution mass spectrometry in protein biomarker research: perspectives and clinical applications

6 June 2018

1 reference

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Proteome sequencing goes deep.

6 June 2018

1 reference

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From lost in translation to paradise found: enabling protein biomarker method transfer by mass spectrometry

6 June 2018

1 reference

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Immunoproteomics using polyclonal antibodies and stable isotope-labeled affinity-purified recombinant proteins

6 June 2018

1 reference

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Mass spectrometry based biomarker discovery, verification, and validation--quality assurance and control of protein biomarker assays

6 June 2018

1 reference

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Simplified and efficient quantification of low-abundance proteins at very high multiplex via targeted mass spectrometry

6 June 2018

1 reference

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Targeted peptide measurements in biology and medicine: best practices for mass spectrometry-based assay development using a fit-for-purpose approach

6 June 2018

1 reference

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Plasma Proteome Database as a resource for proteomics research: 2014 update.

6 June 2018

1 reference

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Statistical design for biospecimen cohort size in proteomics-based biomarker discovery and verification studies

6 June 2018

1 reference

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From genotype to phenotype in human atherosclerosis--recent findings

6 June 2018

1 reference

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Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis.

6 June 2018

1 reference

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6 June 2018

Breaking a vicious cycle

1 reference

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Bringing genome-wide association findings into clinical use.

6 June 2018

1 reference

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Impact of correlation on predictive ability of biomarkers

6 June 2018

1 reference

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Computational biomarker pipeline from discovery to clinical implementation: plasma proteomic biomarkers for cardiac transplantation.

6 June 2018

1 reference

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The riddle of protein diagnostics: future bleak or bright?

6 June 2018

1 reference

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The long journey of cancer biomarkers from the bench to the clinic

6 June 2018

1 reference

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Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

6 June 2018

1 reference

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Systematic comparison of fractionation methods for in-depth analysis of plasma proteomes

6 June 2018

1 reference

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The potential role of ORM2 in the development of colorectal cancer

6 June 2018

1 reference

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Statistical considerations of optimal study design for human plasma proteomics and biomarker discovery

6 June 2018

1 reference

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Trends in ultrasensitive proteomics

6 June 2018

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A Protein Epitope Signature Tag (PrEST) library allows SILAC-based absolute quantification and multiplexed determination of protein copy numbers in cell lines

6 June 2018

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A targeted proteomics-based pipeline for verification of biomarkers in plasma

6 June 2018

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Quantitative, high-resolution proteomics for data-driven systems biology

6 June 2018

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Protein alterations associated with pancreatic cancer and chronic pancreatitis found in human plasma using global quantitative proteomics profiling

6 June 2018

1 reference

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On the development of plasma protein biomarkers

6 June 2018

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The interface between biomarker discovery and clinical validation: The tar pit of the protein biomarker pipeline

6 June 2018

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Semi-Targeted Plasma Proteomics Discovery Workflow Utilizing Two-Stage Protein Depletion and Off-Line LC−MALDI MS/MS

6 June 2018

1 reference

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Statistical methods for assessment of added usefulness of new biomarkers

6 June 2018

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Depletion of abundant plasma proteins and limitations of plasma proteomics.

6 June 2018

1 reference

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Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

6 June 2018

1 reference

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Quantitative proteomics analysis of maternal plasma in Down syndrome pregnancies using isobaric tagging reagent (iTRAQ)

6 June 2018

1 reference

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The clinical plasma proteome: a survey of clinical assays for proteins in plasma and serum

6 June 2018

1 reference

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Multi-site assessment of the precision and reproducibility of multiple reaction monitoring-based measurements of proteins in plasma

6 June 2018

1 reference

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The fundamental flaws of immunoassays and potential solutions using tandem mass spectrometry

6 June 2018

1 reference

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6 June 2018

1 reference

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MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

6 June 2018

1 reference

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Enhanced detection of low abundance human plasma proteins using a tandem IgY12-SuperMix immunoaffinity separation strategy.

6 June 2018

1 reference

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Robust and sensitive iTRAQ quantification on an LTQ Orbitrap mass spectrometer

6 June 2018

1 reference

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Analysis and validation of proteomic data generated by tandem mass spectrometry

6 June 2018

1 reference

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Sample preparation for serum/plasma profiling and biomarker identification by mass spectrometry

6 June 2018

1 reference

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Protein biomarker discovery and validation: the long and uncertain path to clinical utility

6 June 2018

1 reference

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High dynamic range characterization of the trauma patient plasma proteome

6 June 2018

1 reference

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Joint analysis is more efficient than replication-based analysis for two-stage genome-wide association studies

6 June 2018

1 reference

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Reduction of the concentration difference of proteins in biological liquids using a library of combinatorial ligands

6 June 2018

1 reference

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Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

6 June 2018

1 reference

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ROC curves in clinical chemistry: uses, misuses, and possible solutions

6 June 2018

1 reference

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Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments

6 June 2018

1 reference

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An enzymic test for the diagnosis of viral hepatitis; the transaminase serum activities

6 June 2018

1 reference

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Use of proteomic patterns in serum to identify ovarian cancer

6 June 2018

1 reference

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Receiver-operating characteristic (ROC) plots: a fundamental evaluation tool in clinical medicine.

6 June 2018

1 reference

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Multiplexed MRM-based assays for the quantitation of proteins in mouse plasma and heart tissue.

6 June 2018

1 reference

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High precision quantification of human plasma proteins using the automated SISCAPA Immuno-MS workflow.

18 August 2018

1 reference

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Establishing a reliable multiple reaction monitoring-based method for the quantification of obesity-associated comorbidities in serum and adipose tissue requires intensive clinical validation

18 August 2018

1 reference

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OpenSWATH enables automated, targeted analysis of data-independent acquisition MS data

18 August 2018

1 reference

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The plasma proteome identifies expected and novel proteins correlated with micronutrient status in undernourished Nepalese children.

18 August 2018

1 reference

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Multiplexed MRM-based quantitation of candidate cancer biomarker proteins in undepleted and non-enriched human plasma.

18 August 2018

1 reference

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Recommendations for biomarker identification and qualification in clinical proteomics

18 August 2018

1 reference

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High-abundance proteins depletion for serum proteomic analysis: concomitant removal of non-targeted proteins.

18 August 2018

1 reference

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Mass spectrometric quantitation of peptides and proteins using Stable Isotope Standards and Capture by Anti-Peptide Antibodies (SISCAPA).

18 August 2018

1 reference

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Circulating angiogenic factors and the risk of preeclampsia

18 August 2018

1 reference

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Dietary patterns and ethnicity are associated with distinct plasma proteomic groups

18 August 2018

1 reference

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Proteomic approaches to tumor marker discovery

2 December 2018

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12 December 2020

Three Biomarkers Identified from Serum Proteomic Analysis for the Detection of Early Stage Ovarian Cancer

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12 December 2020

The coming age of complete, accurate, and ubiquitous proteomes

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12 December 2020

Effect of biobanking conditions on short-term stability of biomarkers in human serum and plasma

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12 December 2020

Verification of the biomarker candidates for non-small-cell lung cancer using a targeted proteomics approach

1 reference

12 December 2020

[2015 ESC Guidelines for the management of acute coronary syndromes in patients presenting without persistent ST-segment elevation. Task Force for the Management of Acute Coronary Syndromes in Patients Presenting without Persistent ST-Segment Elevat

1 reference

12 December 2020

WITHDRAWN: Heralds of parallel MS: Data-independent acquisition surpassing sequential identification of data dependent acquisition in proteomics

1 reference

30 December 2023

https://opencitations.net/index/api/v1/citations/10.1074/MCP.M116.065730

Identifiers

DOI

10.15252/MSB.20156297

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28951502%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28951502%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

PubMed publication ID

28951502

1 reference