Deconstructing transcriptional heterogeneity in pluripotent stem cells (Q41730518)

8 October 2017

Deconstructing transcriptional heterogeneity in pluripotent stem cells (English)

1 reference

single cell transcriptomics

8 October 2017

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

1 reference

corrigendum / erratum

Erratum: Deconstructing transcriptional heterogeneity in pluripotent stem cells

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author

Alex K. Shalek

3

1 reference

8 October 2017

12

Aviv Regev

1 reference

8 October 2017

4

Rahul Satija

0 references

Patrick Cahan

object named as

Patrick Cahan

2

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George Q. Daley

13

object named as

George Q Daley

1 reference

8 October 2017

6

Hu Li

1 reference

8 October 2017

14

James J Collins

1 reference

8 October 2017

10

John J Trombetta

1 reference

8 October 2017

8

Keith Pardee

1 reference

8 October 2017

9

David Gennert

1 reference

8 October 2017

Roshan M Kumar

1

1 reference

8 October 2017

AJay DaleyKeyser

5

1 reference

8 October 2017

Jin Zhang

7

1 reference

8 October 2017

Thomas C Ferrante

11

1 reference

8 October 2017

language of work or name

English

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publication date

1 December 2014

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external data available at URL

8 October 2017

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE60749

1 reference

A curated database reveals trends in single-cell transcriptomics

https://www.nxn.se/single-cell-studies/data.tsv

7 February 2021

1 reference

8 October 2017

516

1 reference

8 October 2017

7529

1 reference

8 October 2017

56-61

1 reference

describes a project that uses

8 October 2017

cell culture

1 reference

A curated database reveals trends in single-cell transcriptomics

7 February 2021

https://www.nxn.se/single-cell-studies/data.tsv

exact match

https://scigraph.springernature.com/pub.10.1038/nature13920

0 references

cites work

Dynamic heterogeneity and DNA methylation in embryonic stem cells

1 reference

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Single-cell RNA-seq reveals dynamic paracrine control of cellular variation

6 June 2018

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Validation of noise models for single-cell transcriptomics

6 June 2018

1 reference

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Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells

6 June 2018

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Origins and implications of pluripotent stem cell variability and heterogeneity

6 June 2018

1 reference

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Reduced Oct4 expression directs a robust pluripotent state with distinct signaling activity and increased enhancer occupancy by Oct4 and Nanog

6 June 2018

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Naive pluripotency is associated with global DNA hypomethylation

6 June 2018

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Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity

6 June 2018

1 reference

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NuRD suppresses pluripotency gene expression to promote transcriptional heterogeneity and lineage commitment

6 June 2018

1 reference

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The transcriptional and epigenomic foundations of ground state pluripotency.

6 June 2018

1 reference

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Roles for microRNAs in conferring robustness to biological processes

6 June 2018

1 reference

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Self-organizing circuitry and emergent computation in mouse embryonic stem cells.

6 June 2018

1 reference

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Gene expression heterogeneities in embryonic stem cell populations: origin and function

6 June 2018

1 reference

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The Lin28/let-7 axis regulates glucose metabolism

6 June 2018

1 reference

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miR-152 is a tumor suppressor microRNA that is silenced by DNA hypermethylation in endometrial cancer

6 June 2018

1 reference

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Genomic approaches to deconstruct pluripotency

6 June 2018

1 reference

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Pluripotency factors in embryonic stem cells regulate differentiation into germ layers

6 June 2018

1 reference

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Control of the embryonic stem cell state

6 June 2018

1 reference

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Cellular decision making and biological noise: from microbes to mammals

6 June 2018

1 reference

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Opposing microRNA families regulate self-renewal in mouse embryonic stem cells

6 June 2018

1 reference

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Non-genetic heterogeneity of cells in development: more than just noise

6 June 2018

1 reference

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The role of let-7 in cell differentiation and cancer

6 June 2018

1 reference

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Systems biology of stem cell fate and cellular reprogramming

6 June 2018

1 reference

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Regulated fluctuations in nanog expression mediate cell fate decisions in embryonic stem cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Heterogeneity of embryonic and adult stem cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Embryonic stem cell-specific microRNAs regulate the G1-S transition and promote rapid proliferation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

The ground state of embryonic stem cell self-renewal

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

6 June 2018

Capturing pluripotency

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Nanog safeguards pluripotency and mediates germline development

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

RNA sequence analysis defines Dicer's role in mouse embryonic stem cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

New cell lines from mouse epiblast share defining features with human embryonic stem cells

6 June 2018

1 reference

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DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Phenotypic consequences of promoter-mediated transcriptional noise

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Variability and memory of protein levels in human cells

6 June 2018

1 reference

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Maintenance of self-renewal ability of mouse embryonic stem cells in the absence of DNA methyltransferases Dnmt1, Dnmt3a and Dnmt3b

6 June 2018

1 reference

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Control of developmental regulators by Polycomb in human embryonic stem cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

The NuRD component Mbd3 is required for pluripotency of embryonic stem cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Core transcriptional regulatory circuitry in human embryonic stem cells

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Noise in eukaryotic gene expression

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Statistical mechanics of pluripotency.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Cell fate potential of human pluripotent stem cells is encoded by histone modifications.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

A precarious balance: pluripotency factors as lineage specifiers.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Dynamic equilibrium and heterogeneity of mouse pluripotent stem cells with distinct functional and epigenetic states

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Polycomb repressive complex 2 is dispensable for maintenance of embryonic stem cell pluripotency

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4256722

Chaperone-mediated autophagy in protein quality control

18 August 2018

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https://api.crossref.org/works/10.1038%2FNATURE13920

Induced pluripotent stem cell generation using a single lentiviral stem cell cassette

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE13920

Generation of human-induced pluripotent stem cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE13920

A pipeline for the generation of shRNA transgenic mice

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE13920

Efficient generation of midbrain and hindbrain neurons from mouse embryonic stem cells.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE13920

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE13920

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE13920

The UCSC Genome Browser database: update 2011

21 January 2018

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RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE13920

Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithms

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13920

Imaging individual mRNA molecules using multiple singly labeled probes

21 January 2018

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CellProfiler: image analysis software for identifying and quantifying cell phenotypes

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE13920

A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals

21 January 2018

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Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13920

MiRmap: comprehensive prediction of microRNA target repression strength.

21 January 2018

1 reference

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Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13920

Reactome knowledgebase of human biological pathways and processes

21 January 2018

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https://api.crossref.org/works/10.1038%2FNATURE13920

CellNet: network biology applied to stem cell engineering

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13920

Another horse in the meta-stable state of pluripotency

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25471879

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Development of neuronal precursor cells and functional postmitotic neurons from embryonic stem cells in vitro

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13920

inferred from DOI database lookup

7 January 2021

based on heuristic

Redistribution of U-snRNPs during mitosis

1 reference

https://api.crossref.org/works/10.1038%2FNATURE13920

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NATURE13920

1 reference

8 October 2017

1 reference

8 October 2017

1 reference