Evolving specificity of tRNA 3-methyl-cytidine-32 (m3C32) modification: a subset of tRNAsSer requires N6-isopentenylation of A37. (Q41746853)

8 October 2017

Evolving specificity of tRNA 3-methyl-cytidine-32 (m3C32) modification: a subset of tRNAsSer requires N6-isopentenylation of A37. (English)

1 reference

8 October 2017

6

1 reference

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Gopalakrishnan Aneeshkumar Arimbasseri

9 June 2020

1

1 reference

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9 June 2020

Richard J. Maraia

7

1 reference

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9 June 2020

author name string

James Iben

2

1 reference

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9 June 2020

Fan-Yan Wei

3

1 reference

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9 June 2020

Keshab Rijal

4

1 reference

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9 June 2020

Kazuhito Tomizawa

5

1 reference

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9 June 2020

language of work or name

English

0 references

publication date

27 June 2016

1 reference

8 October 2017

1 reference

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9 June 2020

volume

22

1 reference

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9 June 2020

issue

9

1 reference

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9 June 2020

page(s)

1400-1410

1 reference

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Lack of tRNA-i6A modification causes mitochondrial-like metabolic deficiency in S. pombe by limiting activity of cytosolic tRNATyr, not mito-tRNA.

9 June 2020

cites work

1 reference

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Global translational impacts of the loss of the tRNA modification t6A in yeast.

6 June 2018

1 reference

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RNA Polymerase III Output Is Functionally Linked to tRNA Dimethyl-G26 Modification.

6 June 2018

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GtRNAdb 2.0: an expanded database of transfer RNA genes identified in complete and draft genomes

6 June 2018

1 reference

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Defects in tRNA Anticodon Loop 2'-O-Methylation Are Implicated in Nonsyndromic X-Linked Intellectual Disability due to Mutations in FTSJ1

6 June 2018

1 reference

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Quality Control Pathways for Nucleus-Encoded Eukaryotic tRNA Biosynthesis and Subcellular Trafficking

6 June 2018

1 reference

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Diversity of the biosynthesis pathway for threonylcarbamoyladenosine (t(6)A), a universal modification of tRNA

6 June 2018

1 reference

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Conservation of an intricate circuit for crucial modifications of the tRNAPhe anticodon loop in eukaryotes

6 June 2018

1 reference

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A-to-I editing on tRNAs: biochemical, biological and evolutionary implications

6 June 2018

1 reference

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Defective i6A37 modification of mitochondrial and cytosolic tRNAs results from pathogenic mutations in TRIT1 and its substrate tRNA

6 June 2018

1 reference

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Human CLP1 mutations alter tRNA biogenesis, affecting both peripheral and central nervous system function

6 June 2018

1 reference

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Role of tRNA modifications in human diseases

6 June 2018

1 reference

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HAMR: high-throughput annotation of modified ribonucleotides.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Lack of tRNA modification isopentenyl-A37 alters mRNA decoding and causes metabolic deficiencies in fission yeast.

6 June 2018

1 reference

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Transfer RNA post-transcriptional processing, turnover, and subcellular dynamics in the yeast Saccharomyces cerevisiae

6 June 2018

1 reference

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A cyclic form of N6-threonylcarbamoyladenosine as a widely distributed tRNA hypermodification.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Yeast Trm7 interacts with distinct proteins for critical modifications of the tRNAPhe anticodon loop.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Altered nuclear tRNA metabolism in La-deleted Schizosaccharomyces pombe is accompanied by a nutritional stress response involving Atf1p and Pcr1p that is suppressible by Xpo-t/Los1p

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Plasticity and diversity of tRNA anticodon determinants of substrate recognition by eukaryotic A37 isopentenyltransferases

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Retrograde nuclear import of tRNA precursors is required for modified base biogenesis in yeast

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Actin-binding protein ABP140 is a methyltransferase for 3-methylcytidine at position 32 of tRNAs in Saccharomyces cerevisiae

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

A domain of the actin binding protein Abp140 is the yeast methyltransferase responsible for 3-methylcytidine modification in the tRNA anti-codon loop

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Pseudouridine at position 55 in tRNA controls the contents of other modified nucleotides for low-temperature adaptation in the extreme-thermophilic eubacterium Thermus thermophilus

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

tRNA biology charges to the front

6 June 2018

1 reference

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N7-Methylguanine at position 46 (m7G46) in tRNA from Thermus thermophilus is required for cell viability at high temperatures through a tRNA modification network

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Cellular dynamics of tRNAs and their genes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

A sequence element that tunes Escherichia coli tRNA(Ala)(GGC) to ensure accurate decoding.

6 June 2018

1 reference

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Precursor-product discrimination by La protein during tRNA metabolism.

6 June 2018

1 reference

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Jalview Version 2--a multiple sequence alignment editor and analysis workbench

6 June 2018

1 reference

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tRNAdb 2009: compilation of tRNA sequences and tRNA genes

6 June 2018

1 reference

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Different aa-tRNAs are selected uniformly on the ribosome

6 June 2018

1 reference

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A decade of surprises for tRNA nuclear-cytoplasmic dynamics

6 June 2018

1 reference

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Trm9-catalyzed tRNA modifications link translation to the DNA damage response

6 June 2018

1 reference

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Cytoplasmic splicing of tRNA in Saccharomyces cerevisiae

6 June 2018

1 reference

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Diversity of tRNA genes in eukaryotes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Retrograde movement of tRNAs from the cytoplasm to the nucleus in Saccharomyces cerevisiae

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

MUSCLE: multiple sequence alignment with high accuracy and high throughput

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Possibility of cytoplasmic pre-tRNA splicing: the yeast tRNA splicing endonuclease mainly localizes on the mitochondria

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

tRNomics: analysis of tRNA genes from 50 genomes of Eukarya, Archaea, and Bacteria reveals anticodon-sparing strategies and domain-specific features

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Aberrant nuclear trafficking of La protein leads to disordered processing of associated precursor tRNAs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Escherichia coli dimethylallyl diphosphate:tRNA dimethylallyltransferase: essential elements for recognition of tRNA substrates within the anticodon stem-loop

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Isolation and characterization of a novel actin filament-binding protein from Saccharomyces cerevisiae

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Structural requirements for enzymatic formation of threonylcarbamoyladenosine (t6A) in tRNA: an in vivo study with Xenopus laevis oocytes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Transfer RNA recognition by the Escherichia coli delta2-isopentenyl-pyrophosphate:tRNA delta2-isopentenyl transferase: dependence on the anticodon arm structure

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

C to U editing and modifications during the maturation of the mitochondrial tRNA(Asp) in marsupials

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

The primary structures of two arginine tRNAs (anticodons C-C-U and mcm5a2U-C-psi) and of glutamine tRNA (anticodon C-U-G) from bovine liver.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

The nucleotide sequence of arginine tRNACCG from bovine liver

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Nucleotide sequences of three tRNA(Ser) from Drosophila melanogaster reading the six serine codons

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Amber, ochre and opal suppressor tRNA genes derived from a human serine tRNA gene.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Nucleotide sequence of phenylalanine transfer RNA from Schizosaccharomyces pombe: implications for transfer RNA recognition by yeast phenylalanyl-tRNA synthetase

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

C to U editing stimulates A to I editing in the anticodon loop of a cytoplasmic threonyl tRNA in Trypanosoma brucei

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4986895

Translational efficiency of transfer RNA's: uses of an extended anticodon

18 August 2018

1 reference

12 December 2020

Nucleotide Sequences of Rat Liver Serine-tRNA. 3. The Partial Enzymatic Digestion of Serine-tRNA1 and Derivation of its Total Primary Structure

1 reference

12 December 2020

Evolution of +1 programmed frameshifting signals and frameshift-regulating tRNAs in the order Saccharomycetales

1 reference

12 December 2020

Singly and bifurcated hydrogen-bonded base-pairs in tRNA anticodon hairpins and ribozymes

1 reference

12 December 2020

Idiosyncratic tuning of tRNAs to achieve uniform ribosome binding

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.056259.116

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27354703%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27354703%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

PubMed publication ID

27354703

1 reference