Structural and functional characterization of the N terminus of Schizosaccharomyces pombe Cwf10. (Q41790611)

10 October 2017

Structural and functional characterization of the N terminus of Schizosaccharomyces pombe Cwf10. (English)

1 reference

Schizosaccharomyces pombe

10 October 2017

object named as

Schizosaccharomyces pombe

1 reference

4

Jürg Bähler

0 references

author name string

S Brent Livesay

1

1 reference

10 October 2017

Scott E Collier

2

1 reference

10 October 2017

Danny A Bitton

3

1 reference

10 October 2017

Jürg Bähler

4

1 reference

10 October 2017

Melanie D Ohi

5

1 reference

10 October 2017

6 September 2013

1 reference

10 October 2017

1 reference

10 October 2017

12

1 reference

10 October 2017

11

1 reference

10 October 2017

1472-1489

1 reference

describes a project that uses

10 October 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3837936/fullTextXML

inferred from PubMed Central ID database lookup

cites work

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Malleable ribonucleoprotein machine: protein intrinsic disorder in the Saccharomyces cerevisiae spliceosome

6 June 2018

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A weak spliceosome-binding domain of Yju2 functions in the first step and bypasses Prp16 in the second step of splicing

6 June 2018

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Structural bioinformatics of the human spliceosomal proteome

6 June 2018

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Architecture of the spliceosome

6 June 2018

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CEF1/CDC5 alleles modulate transitions between catalytic conformations of the spliceosome

6 June 2018

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Semiquantitative proteomic analysis of the human spliceosome via a novel two-dimensional gel electrophoresis method

6 June 2018

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Spliceosome Structure and Function

6 June 2018

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Systematic two-hybrid and comparative proteomic analyses reveal novel yeast pre-mRNA splicing factors connected to Prp19.

6 June 2018

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Genomic mRNA profiling reveals compensatory mechanisms for the requirement of the essential splicing factor U2AF.

6 June 2018

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Differential expression analysis for sequence count data

6 June 2018

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Analysis of a genome-wide set of gene deletions in the fission yeast Schizosaccharomyces pombe.

6 June 2018

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A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

6 June 2018

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The N-terminus of Prp1 (Prp6/U5-102 K) is essential for spliceosome activation in vivo

6 June 2018

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A large intrinsically disordered region in SKIP and its disorder-order transition induced by PPIL1 binding revealed by NMR

6 June 2018

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The evolutionarily conserved core design of the catalytic activation step of the yeast spliceosome

6 June 2018

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Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components

6 June 2018

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Ensembl Genomes: extending Ensembl across the taxonomic space

6 June 2018

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Analysis of synthetic lethality reveals genetic interactions between the GTPase Snu114p and snRNAs in the catalytic core of the Saccharomyces cerevisiae spliceosome

6 June 2018

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Structural evidence for consecutive Hel308-like modules in the spliceosomal ATPase Brr2

6 June 2018

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

6 June 2018

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The spliceosome: design principles of a dynamic RNP machine

6 June 2018

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ATP-dependent unwinding of U4/U6 snRNAs by the Brr2 helicase requires the C terminus of Prp8.

6 June 2018

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Splicing factors facilitate RNAi-directed silencing in fission yeast

6 June 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

6 June 2018

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K2D2: estimation of protein secondary structure from circular dichroism spectra.

6 June 2018

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Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components

6 June 2018

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Structural characterization of the fission yeast U5.U2/U6 spliceosome complex

6 June 2018

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The EF-G-like GTPase Snu114p regulates spliceosome dynamics mediated by Brr2p, a DExD/H box ATPase

6 June 2018

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The network of protein-protein interactions within the human U4/U6.U5 tri-snRNP

6 June 2018

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Assembly of Snu114 into U5 snRNP requires Prp8 and a functional GTPase domain

6 June 2018

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Dissection of Prp8 protein defines multiple interactions with crucial RNA sequences in the catalytic core of the spliceosome

6 June 2018

1 reference

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Prp8p dissection reveals domain structure and protein interaction sites

6 June 2018

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Spliceosome disassembly catalyzed by Prp43 and its associated components Ntr1 and Ntr2.

6 June 2018

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Protein structure prediction servers at University College London

6 June 2018

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Genetic analysis reveals a role for the C terminus of the Saccharomyces cerevisiae GTPase Snu114 during spliceosome activation

6 June 2018

1 reference

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Prp8 protein: at the heart of the spliceosome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Dim1p is required for efficient splicing and export of mRNA encoding lid1p, a component of the fission yeast anaphase-promoting complex

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Negative staining and image classification — powerful tools in modern electron microscopy

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

The DISOPRED server for the prediction of protein disorder

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

The Prp19p-associated complex in spliceosome activation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Pre-mRNA splicing: awash in a sea of proteins

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Crystal structure of a complex between human spliceosomal cyclophilin H and a U4/U6 snRNP-60K peptide

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Semiquantitative RT-PCR analysis to assess the expression levels of multiple transcripts from the same sample

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Two crystal structures demonstrate large conformational changes in the eukaryotic ribosomal translocase

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Pre-spliceosome formation in S.pombe requires a stable complex of SF1-U2AF(59)-U2AF(23)

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

The ribosomal translocase homologue Snu114p is involved in unwinding U4/U6 RNA during activation of the spliceosome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Large-scale proteomic analysis of the human spliceosome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Characterization of interactions among the Cef1p-Prp19p-associated splicing complex

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Shotgun identification of protein modifications from protein complexes and lens tissue

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Prp43 is an essential RNA-dependent ATPase required for release of lariat-intron from the spliceosome

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Proteomics analysis reveals stable multiprotein complexes in both fission and budding yeasts containing Myb-related Cdc5p/Cef1p, novel pre-mRNA splicing factors, and snRNAs.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Size-Distribution Analysis of Macromolecules by Sedimentation Velocity Ultracentrifugation and Lamm Equation Modeling

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Functional Cus1p is found with Hsh155p in a multiprotein splicing factor associated with U2 snRNA

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Protein secondary structure prediction based on position-specific scoring matrices

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Purification of the yeast U4/U6.U5 small nuclear ribonucleoprotein particle and identification of its proteins

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Cef1p is a component of the Prp19p-associated complex and essential for pre-mRNA splicing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Molecular genetic analysis of U2AF59 in Schizosaccharomyces pombe: differential sensitivity of introns to mutational inactivation

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Protein-RNA interactions in the U5 snRNP of Saccharomyces cerevisiae

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

The human U5-220kD protein (hPrp8) forms a stable RNA-free complex with several U5-specific proteins, including an RNA unwindase, a homologue of ribosomal elongation factor EF-2, and a novel WD-40 protein

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Mechanical devices of the spliceosome: motors, clocks, springs, and things

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Functional analysis of the U5 snRNA loop 1 in the second catalytic step of yeast pre-mRNA splicing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Prp43: An RNA helicase-like factor involved in spliceosome disassembly

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

An evolutionarily conserved U5 snRNP-specific protein is a GTP-binding factor closely related to the ribosomal translocase EF-2.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Small nuclear ribonucleoprotein (RNP) U2 contains numerous additional proteins and has a bipartite RNP structure under splicing conditions

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Evidence that the 60-kDa protein of 17S U2 small nuclear ribonucleoprotein is immunologically and functionally related to the yeast PRP9 splicing factor and is required for the efficient formation of prespliceosomes

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

The Schizosaccharomyces pombe cdc5+ gene encodes an essential protein with homology to c-Myb

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Comparative protein modelling by satisfaction of spatial restraints

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Efficient targeted integration at leu1-32 and ura4-294 in Schizosaccharomyces pombe.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Method to correlate tandem mass spectra of modified peptides to amino acid sequences in the protein database

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Characterization and functional ordering of Slu7p and Prp17p during the second step of pre-mRNA splicing in yeast

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

20S small nuclear ribonucleoprotein U5 shows a surprisingly complex protein composition

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Two domains of yeast U6 small nuclear RNA required for both steps of nuclear precursor messenger RNA splicing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Genetic control of the cell division cycle in the fission yeast Schizosaccharomyces pombe

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Release of SF3 from the intron branchpoint activates the first step of pre-mRNA splicing

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Isolation of an active step I spliceosome and composition of its RNP core.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Preparation of yeast RNA.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Tandem affinity purification and identification of protein complex components

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Mutagenesis Suggests Several Roles of Snu114p in Pre-mRNA Splicing

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Mutation in the prp12+ gene encoding a homolog of SAP130/SF3b130 causes differential inhibition of pre-mRNA splicing and arrest of cell-cycle progression in Schizosaccharomyces pombe

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Vectors and gene targeting modules for tandem affinity purification in Schizosaccharomyces pombe

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

spp42, identified as a classical suppressor of prp4-73, which encodes a kinase involved in pre-mRNA splicing in fission yeast, is a homologue of the splicing factor Prp8p

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3837936

Separation of splicing factor SF3 into two components and purification of SF3a activity

18 August 2018

1 reference

12 December 2020

Cell division cycle mutants altered in DNA replication and mitosis in the fission yeast Schizosaccharomyces pombe

1 reference

12 December 2020

prp4 from Schizosaccharomyces pombe, a mutant deficient in pre-mRNA splicing isolated using genes containing artificial introns

1 reference

12 December 2020

Isolation of novel pre-mRNA splicing mutants of Schizosaccharomyces pombe

1 reference

12 December 2020

Splicing factor Prp8 governs U4/U6 RNA unwinding during activation of the spliceosome

1 reference

12 December 2020

U5 snRNA interacts with exon sequences at 5′ and 3′ splice sites

1 reference

12 December 2020

Thiamine-repressible expression vectors pREP and pRIP for fission yeast

1 reference

12 December 2020

Identifiers

DOI

10.1128/EC.00140-13

1 reference

10 October 2017

1 reference

10 October 2017

PubMed publication ID

24014766

1 reference