PI2PE: protein interface/interior prediction engine (Q41828240)

12 October 2017

PI2PE: protein interface/interior prediction engine (English)

1 reference

12 October 2017

3

1 reference

12 October 2017

Harianto Tjong

1

1 reference

PMC publication ID

1933225

12 October 2017

Sanbo Qin

series ordinal

2

1 reference

12 October 2017

25 May 2007

1 reference

12 October 2017

Nucleic Acids Research

1 reference

12 October 2017

35

1 reference

12 October 2017

Web Server issue

1 reference

12 October 2017

W357-62

1 reference

Template-based modeling and free modeling by I-TASSER in CASP7.

12 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Protein binding site prediction using an empirical scoring function

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

ET viewer: an application for predicting and visualizing functional sites in protein structures

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Predicting DNA-binding sites of proteins from amino acid sequence

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

SHARP2: protein-protein interaction predictions using patch analysis.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Data-driven docking: HADDOCK's adventures in CAPRI.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Prediction of solvent accessibility and sites of deleterious mutations from protein sequence.

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Insights into protein-protein interfaces using a Bayesian network prediction method

6 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Structural basis of DNA recognition by p53 tetramers.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

An algorithm for predicting protein-protein interaction sites: Abnormally exposed amino acid residues and secondary structure elements

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Prediction of MEF2A-DNA interface by rigid body docking: a tool for fast estimation of protein mutational effects on DNA binding.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Statistical analysis and prediction of protein-protein interfaces

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Improved prediction of protein-protein binding sites using a support vector machines approach

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

ZDOCK: an initial-stage protein-docking algorithm.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

Prediction of protein interaction sites from sequence profile and residue neighbor list

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933225

The 'wildtype' conformation of p53: epitope mapping using hybrid proteins

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17526530

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM231

1 reference

12 October 2017

journals/nar/TjongQZ07

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

1933225

12 October 2017

PubMed publication ID

17526530

1 reference

PMC publication ID

1933225