The nucleosome map of the mammalian liver (Q41882436)

13 October 2017

The nucleosome map of the mammalian liver (English)

1 reference

13 October 2017

4

1 reference

13 October 2017

Zhaoyu Li

1

0 references

author name string

Jonathan Schug

series ordinal

2

1 reference

13 October 2017

Geetu Tuteja

series ordinal

3

1 reference

13 October 2017

Klaus H Kaestner

series ordinal

5

1 reference

13 October 2017

29 May 2011

1 reference

Nature Structural & Molecular Biology

13 October 2017

1 reference

13 October 2017

18

1 reference

13 October 2017

6

1 reference

13 October 2017

742-746

1 reference

https://scigraph.springernature.com/pub.10.1038/nsmb.2060

13 October 2017

0 references

cites work

Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Relationship between nucleosome positioning and DNA methylation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Transcriptional competence and the active marking of tissue-specific enhancers by defined transcription factors in embryonic and induced pluripotent stem cells

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Foxa1 and Foxa2 regulate bile duct development in mice

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

ChIP-seq accurately predicts tissue-specific activity of enhancers

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Cis-regulatory modules in the mammalian liver: composition depends on strength of Foxa2 consensus site

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Dynamic regulation of nucleosome positioning in the human genome

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

The initiation of liver development is dependent on Foxa transcription factors

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Foxa3 (hepatocyte nuclear factor 3gamma ) is required for the regulation of hepatic GLUT2 expression and the maintenance of glucose homeostasis during a prolonged fast

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Methylation of histone H3 lysine 9 creates a binding site for HP1 proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Developmental competence of the gut endoderm: genetic potentiation by GATA and HNF3/fork head proteins

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Targeted disruption of the gene encoding hepatocyte nuclear factor 3gamma results in reduced transcription of hepatocyte-specific genes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Transcription factor access to chromatin

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Genesis, a winged helix transcriptional repressor with expression restricted to embryonic stem cells

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

A histone-binding protein, nucleoplasmin, stimulates transcription factor binding to nucleosomes and factor-induced nucleosome disassembly.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

CpG islands in vertebrate genomes

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Isolation and distribution of a Drosophila protein preferentially associated with inactive regions of the genome.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Hepatocyte nuclear factor 3 alpha belongs to a gene family in mammals that is homologous to the Drosophila homeotic gene fork head

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

An active tissue-specific enhancer and bound transcription factors existing in a precisely positioned nucleosomal array.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

Nucleosome binding by the constitutive transcription factor Sp1.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3148658

CCAAT enhancer- binding protein beta is required for normal hepatocyte proliferation in mice after partial hepatectomy

18 August 2018

1 reference

Retinoblastoma protein transcriptional repression through histone deacetylation of a single nucleosome

21 January 2018

1 reference

Transcriptional networks in the liver: hepatocyte nuclear factor 6 function is largely independent of Foxa2.

21 January 2018

1 reference

Extracting transcription factor targets from ChIP-Seq data

21 January 2018

1 reference

WebLogo: A Sequence Logo Generator

21 January 2018

1 reference

Dynamic regulation of Pdx1 enhancers by Foxa1 and Foxa2 is essential for pancreas development.

21 January 2018

1 reference

Significance analysis of microarrays applied to the ionizing radiation response

21 January 2018

1 reference

CpG islands in chromatin organization and gene expression

21 January 2018

1 reference

Redox properties of cytochrome c nitrite reductase from Desulfovibrio desulfuricans ATCC 27774

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.2060

1 reference

Dimensions Publication ID

13 October 2017

0 references

1 reference

13 October 2017

1 reference