Discriminant analysis of principal components: a new method for the analysis of genetically structured populations (Q41915386)

14 October 2017

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations (English)

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Discriminant Analysis of Principal Components

14 October 2017

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Thibaut Jombart

1 reference

14 October 2017

2

Sébastien Devillard

1 reference

14 October 2017

François Balloux

3

1 reference

14 October 2017

15 October 2010

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14 October 2017

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14 October 2017

11

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14 October 2017

94

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https://scigraph.springernature.com/pub.10.1186/1471-2156-11-94

14 October 2017

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cites work

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Picante: R tools for integrating phylogenies and ecology

5 June 2018

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pegas: an R package for population genetics with an integrated-modular approach

5 June 2018

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A genealogical interpretation of principal components analysis

5 June 2018

1 reference

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Identifying currents in the gene pool for bacterial populations using an integrative approach

5 June 2018

1 reference

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The global pattern of gene identity variation reveals a history of long-range migrations, bottlenecks, and local mate exchange: implications for biological race

5 June 2018

1 reference

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PCA-based population structure inference with generic clustering algorithms

5 June 2018

1 reference

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Genetic markers in the playground of multivariate analysis

5 June 2018

1 reference

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Jalview Version 2--a multiple sequence alignment editor and analysis workbench

5 June 2018

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Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

5 June 2018

1 reference

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Interpreting principal component analyses of spatial population genetic variation

5 June 2018

1 reference

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The global circulation of seasonal influenza A (H3N2) viruses

5 June 2018

1 reference

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The genomic and epidemiological dynamics of human influenza A virus

5 June 2018

1 reference

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adegenet: a R package for the multivariate analysis of genetic markers

5 June 2018

1 reference

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5 June 2018

1 reference

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Genetic variation and population structure in native Americans

5 June 2018

1 reference

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Clustal W and Clustal X version 2.0

5 June 2018

1 reference

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Going the distance: human population genetics in a clinal world.

5 June 2018

1 reference

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CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure

5 June 2018

1 reference

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Population structure and eigenanalysis

5 June 2018

1 reference

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Bayesian clustering using hidden Markov random fields in spatial population genetics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Principal components analysis corrects for stratification in genome-wide association studies

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

A non-parametric approach to population structure inference using multilocus genotypes

5 June 2018

1 reference

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Clines, clusters, and the effect of study design on the inference of human population structure

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Geography is a better determinant of human genetic differentiation than ethnicity

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Whole-genome analysis of human influenza A virus reveals multiple persistent lineages and reassortment among recent H3N2 viruses

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

The statistical analysis of multivariate serological frequency data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Geography predicts neutral genetic diversity of human populations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Evidence for gradients of human genetic diversity within and among continents

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Mapping the antigenic and genetic evolution of influenza virus

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

APE: Analyses of Phylogenetics and Evolution in R language

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Predictive validity of discriminant analysis for genetic data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

R ACE , A NCESTRY , AND G ENES : Implications for Defining Disease Risk

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Genetic structure of human populations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

A human genome diversity cell line panel

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Inference of population structure using multilocus genotype data

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Analysis of Gene Diversity in Subdivided Populations

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Evolution of human influenza A viruses in nature: recombination contributes to genetic variation of H1N1 strains

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Bayesian analysis of genetic differentiation between populations.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

EASYPOP (version 1.7): a computer program for population genetics simulations.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

How accurate is the current picture of human genetic variation?

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2973851

Evidence that two main bottleneck events shaped modern human genetic diversity

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20950446

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Revealing cryptic spatial patterns in genetic variability by a new multivariate method

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20950446

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2156-11-94

1 reference

PMCID

2973851

Dimensions Publication ID

14 October 2017

0 references

1 reference

14 October 2017

1 reference

PMCID

2973851