DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra. (Q41953056)

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2 March 2020

title

DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24295440%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

main subject

open-source software

0 references

graphical user interface

1 reference

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24295440%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Christian G Huber

4

1 reference

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2 March 2020

Thilo Muth

1

1 reference

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2 March 2020

Lennart Martens

5

1 reference

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2 March 2020

Marc Vaudel

6

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2 March 2020

7

Harald Barsnes

1 reference

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2 March 2020

author name string

Lisa Weilnböck

2

1 reference

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2 March 2020

publication date

7 January 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24295440%20AND%20SRC:MED&resulttype=core&format=json

Journal of Proteome Research

2 March 2020

number of pages

4

1 reference

based on heuristic

inferred from page(s)

published in

1 reference

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2 March 2020

volume

13

1 reference

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2 March 2020

issue

2

1 reference

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2 March 2020

page(s)

1143-1146

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Searching for a needle in a stack of needles: challenges in metaproteomics data analysis

2 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

Algorithms for the de novo sequencing of peptides from tandem mass spectra

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

compomics-utilities: an open-source Java library for computational proteomics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

Discovery and revision of Arabidopsis genes by proteogenomics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

A la carte proteomics with an emphasis on gel-free techniques

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

PepNovo: de novo peptide sequencing via probabilistic network modeling

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

Open mass spectrometry search algorithm

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

What to do with "one-hit wonders"?

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

TANDEM: matching proteins with tandem mass spectra

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

PEAKS: powerful software for peptide de novo sequencing by tandem mass spectrometry

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

Mass spectrometry-based proteomics

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

The PSI-MOD community standard for representation of protein modification data.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

Performance evaluation of existing de novo sequencing algorithms.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

Monolithic capillary columns for liquid chromatography-electrospray ionization mass spectrometry in proteomic and genomic research

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3923451

18 August 2018

Identifiers

DOI

10.1021/PR4008078

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24295440%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

1 reference

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2 March 2020

PubMed publication ID

24295440

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24295440%20AND%20SRC:MED&resulttype=core&format=json