AAindex: amino acid index database, progress report 2008 (Q42002245)

15 October 2017

AAindex: amino acid index database, progress report 2008 (English)

1 reference

15 October 2017

0 references

Shuichi Kawashima

1

0 references

Andrzej Koliński

object named as

Andrzej Kolinski

series ordinal

4

0 references

Piotr Pokarowski

series ordinal

2

object named as

Piotr Pokarowski

1 reference

15 October 2017

3

Maria Pokarowska

1 reference

15 October 2017

Toshiaki Katayama

5

1 reference

PMCID

2238890

15 October 2017

Minoru Kanehisa

series ordinal

6

1 reference

15 October 2017

12 November 2007

1 reference

15 October 2017

Nucleic Acids Research

1 reference

15 October 2017

36

1 reference

15 October 2017

Database issue

1 reference

15 October 2017

D202-5

1 reference

POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties

15 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution matrices

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

Inferring ideal amino acid interaction forms from statistical protein contact potentials

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

CRASP: a program for analysis of coordinated substitutions in multiple alignments of protein sequences.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

EMBOSS: the European Molecular Biology Open Software Suite

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

AAindex: amino acid index database

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

AAindex: Amino Acid Index Database.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

Linking databases and organisms: GenomeNet resources in Japan

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

Cluster analysis of amino acid indices for prediction of protein structure and function

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

Ideal amino acid exchange forms for approximating substitution matrices.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

Predicting the protein SUMO modification sites based on Properties Sequential Forward Selection (PSFS).

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

DBGET/LinkDB: an integrated database retrieval system.

18 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238890

Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins

18 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17998252

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Self-consistent estimation of inter-residue protein contact energies based on an equilibrium mixture approximation of residues

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17998252

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM998

1 reference

journals/nar/KawashimaPPKKK08

15 October 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

15 October 2017

1 reference

PMCID

2238890