Ulla: a program for calculating environment-specific amino acid substitution tables (Q42025566)

15 October 2017

Ulla: a program for calculating environment-specific amino acid substitution tables (English)

1 reference

15 October 2017

2

Tom L Blundell

1 reference

15 October 2017

Semin Lee

1

1 reference

15 October 2017

language of work or name

English

0 references

publication date

5 May 2009

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15 October 2017

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15 October 2017

25

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15 October 2017

15

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15 October 2017

1976-1977

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Discarding functional residues from the substitution table improves predictions of active sites within three-dimensional structures

15 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712337

HOMSTRAD: a database of protein structure alignments for homologous families

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712337

JOY: protein sequence-structure representation and analysis.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712337

Fragment ranking in modelling of protein structure. Conformationally constrained environmental amino acid substitution tables.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712337

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712337

Amino acid substitution matrices from protein blocks

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712337

Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712337

Distinguishing structural and functional restraints in evolution in order to identify interaction sites

5 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2712337

Functional restraints on the patterns of amino acid substitutions: Application to sequence-structure homology recognition

17 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19417059

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTP300

1 reference

journals/bioinformatics/LeeB09a

15 October 2017

1 reference

DBLP Dataset 2021-01-02

release_cj2ephvjzzeg7iyfmazdqhb6yq

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/cj2ephvjzzeg7iyfmazdqhb6yq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

15 October 2017

PubMed publication ID

19417059

1 reference