ScanRanker: Quality assessment of tandem mass spectra via sequence tagging (Q42127370)

17 October 2017

ScanRanker: Quality assessment of tandem mass spectra via sequence tagging (English)

1 reference

17 October 2017

David L Tabb

10

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author name string

Ze-Qiang Ma

1

1 reference

17 October 2017

Matthew C Chambers

2

1 reference

17 October 2017

Amy-Joan L Ham

3

1 reference

17 October 2017

Kristin L Cheek

4

1 reference

17 October 2017

Corbin W Whitwell

5

1 reference

17 October 2017

Hans-Rudolf Aerni

6

1 reference

17 October 2017

Birgit Schilling

7

1 reference

17 October 2017

Aaron W Miller

8

1 reference

17 October 2017

Richard M Caprioli

9

1 reference

17 October 2017

26 April 2011

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Journal of Proteome Research

17 October 2017

1 reference

17 October 2017

10

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17 October 2017

7

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17 October 2017

2896-2904

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

17 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Topographic studies of the GroEL-GroES chaperonin complex by chemical cross-linking using diformyl ethynylbenzene: the power of high resolution electron transfer dissociation for determination of both peptide sequences and their attachment sites

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Computational analysis of unassigned high-quality MS/MS spectra in proteomic data sets

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Probing native protein structures by chemical cross-linking, mass spectrometry, and bioinformatics

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

TagRecon: high-throughput mutation identification through sequence tagging

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Prostate cancer serum biomarker discovery through proteomic analysis of alpha-2 macroglobulin protein complexes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Finding chimeras: a bioinformatics strategy for identification of cross-linked peptides

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Biomolecular characterization and protein sequences of the Campanian hadrosaur B. canadensis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

The bis-electrophile diepoxybutane cross-links DNA to human histones but does not result in enhanced mutagenesis in recombinant systems

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

A ranking-based scoring function for peptide-spectrum matches

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

DirecTag: accurate sequence tags from peptide MS/MS through statistical scoring

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

ProteoWizard: open source software for rapid proteomics tools development

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Verification of automated peptide identifications from proteomic tandem mass spectra

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

msmsEval: tandem mass spectral quality assignment for high-throughput proteomics.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

MyriMatch: highly accurate tandem mass spectral peptide identification by multivariate hypergeometric analysis

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Quality assessment of tandem mass spectra based on cumulative intensity normalization

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Improving the reliability and throughput of mass spectrometry-based proteomics by spectrum quality filtering

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Quality classification of tandem mass spectrometry data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

PepNovo: de novo peptide sequencing via probabilistic network modeling

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Assessing data quality of peptide mass spectra obtained by quadrupole ion trap mass spectrometry

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Spectral quality assessment for high-throughput tandem mass spectrometry proteomics

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

TANDEM: matching proteins with tandem mass spectra

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Probability-based protein identification by searching sequence databases using mass spectrometry data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Error-tolerant identification of peptides in sequence databases by peptide sequence tags

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

Automatic quality assessment of peptide tandem mass spectra.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3128668

17 August 2018

Identifiers

DOI

10.1021/PR200118R

1 reference

17 October 2017

1 reference

17 October 2017

PubMed publication ID

21520941

1 reference