Swarm: robust and fast clustering method for amplicon-based studies (Q42132505)

17 October 2017

Swarm: robust and fast clustering method for amplicon-based studies (English)

1 reference

17 October 2017

1 reference

Torbjørn Rognes

2

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Christopher Quince

object named as

Christopher Quince

series ordinal

3

0 references

Micah Dunthorn

series ordinal

5

object named as

Micah Dunthorn

1 reference

17 October 2017

4

Colomban de Vargas

1 reference

17 October 2017

1

Frédéric Mahé

1 reference

17 October 2017

25 September 2014

1 reference

17 October 2017

1 reference

17 October 2017

2

1 reference

17 October 2017

e593

1 reference

PMCID

4178461

describes a project that uses

17 October 2017

ggplot2

object named as

ggplot2

2 references

10 June 2022

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=4178461

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

Patterns of rare and abundant marine microbial eukaryotes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Surprisingly extensive mixed phylogenetic and ecological signals among bacterial Operational Taxonomic Units

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

CD-HIT: accelerated for clustering the next-generation sequencing data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

PANDAseq: paired-end assembler for illumina sequences

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

A holistic approach to marine eco-systems biology

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

DNACLUST: accurate and efficient clustering of phylogenetic marker genes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Search and clustering orders of magnitude faster than BLAST

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

QIIME allows analysis of high-throughput community sequencing data

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Microbial diversity in the deep sea and the underexplored "rare biosphere"

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Identification of common molecular subsequences

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

A general method applicable to the search for similarities in the amino acid sequence of two proteins

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Placing environmental next-generation sequencing amplicons from microbial eukaryotes into a phylogenetic context

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Delimiting operational taxonomic units for assessing ciliate environmental diversity using small-subunit rRNA gene sequences

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

Diversity patterns of uncultured Haptophytes unravelled by pyrosequencing in Naples Bay.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

An improved algorithm for matching biological sequences.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4178461

On the Theory and Computation of Evolutionary Distances

17 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.7717%2FPEERJ.593

Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.7717%2FPEERJ.593

21 January 2018

Identifiers

DOI

10.7717/PEERJ.593

1 reference

17 October 2017

1 reference

17 October 2017

1 reference

PMCID

4178461