Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics (Q42148193)

17 October 2017

Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics (English)

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17 October 2017

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2

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17 October 2017

5

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17 October 2017

Joaquín Dopazo

6

0 references

Jaime Huerta-Cepas

series ordinal

4

object named as

Jaime Huerta-Cepas

1 reference

17 October 2017

Joaquín Tárraga

1

1 reference

17 October 2017

Leonardo Arbiza

series ordinal

3

1 reference

17 October 2017

Hernán Dopazo

series ordinal

7

1 reference

17 October 2017

22 April 2007

1 reference

17 October 2017

Nucleic Acids Research

1 reference

17 October 2017

35

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17 October 2017

Web Server issue

1 reference

17 October 2017

W38-42

1 reference

Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative

17 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Genome-scale evidence of the nematode-arthropod clade

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

ProtTest: selection of best-fit models of protein evolution

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

HyPhy: hypothesis testing using phylogenies

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

MUSCLE: multiple sequence alignment with high accuracy and high throughput

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

MrBayes 3: Bayesian phylogenetic inference under mixed models

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Codon-substitution models for heterogeneous selection pressure at amino acid sites

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

MODELTEST: testing the model of DNA substitution

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Synonymous and nonsynonymous rate variation in nuclear genes of mammals.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

PAML: a program package for phylogenetic analysis by maximum likelihood

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Evolution of the Zfx and Zfy genes: rates and interdependence between the genes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Unbiased estimation of the rates of synonymous and nonsynonymous substitution

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Generation time and genomic evolution in primates

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Detecting amino acid sites under positive selection and purifying selection

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Phylogenomics and the number of characters required for obtaining an accurate phylogeny of eukaryote model species.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Inferring confidence sets of possibly misspecified gene trees.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

RRTree: relative-rate tests between groups of sequences on a phylogenetic tree.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

Selective Pressures at a Codon-level Predict Deleterious Mutations in Human Disease Genes

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933211

A method for detecting positive selection at single amino acid sites

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17452346

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sensitivity of the relative-rate test to taxonomic sampling

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17452346

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKM224

1 reference

journals/nar/TarragaMAHGDD07

17 October 2017

1 reference

DBLP Dataset 2021-01-02

release_tmoxqpkvgjfozorlogz5xufaiy

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/tmoxqpkvgjfozorlogz5xufaiy

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

17 October 2017

1 reference