Simplified methods for pKa and acid pH-dependent stability estimation in proteins: removing dielectric and counterion boundaries. (Q42159639)

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11 November 2019

title

Simplified methods for pKa and acid pH-dependent stability estimation in proteins: removing dielectric and counterion boundaries (English)

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11 November 2019

1

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11 November 2019

author name string

Warwicker J

series ordinal

1

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17 October 2017

1 February 1999

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11 November 2019

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11 November 2019

volume

8

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11 November 2019

issue

2

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11 November 2019

page(s)

418-425

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The effect of protein relaxation on charge-charge interactions and dielectric constants of proteins

11 November 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Conformation and hydrogen ion titration of proteins: a continuum electrostatic model with conformational flexibility

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Prediction of pH-dependent properties of proteins

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Binding of Ca2+ to calbindin D9k: structural stability and function at high salt concentration

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

pKA values of carboxyl groups in the native and denatured states of barnase: the pKA values of the denatured state are on average 0.4 units lower than those of model compounds

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Continuum dielectric modelling of the protein-solvent system, and calculation of the long-range electrostatic field of the enzyme phosphoglycerate mutase.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Protonation of interacting residues in a protein by a Monte Carlo method: application to lysozyme and the photosynthetic reaction center of Rhodobacter sphaeroides

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Role of electrostatic interaction in the stability of the hexamer of constitutive phycocyanin from Fremyella diplosiphon

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Refined structure of the pore-forming domain of colicin A at 2.4 A resolution

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

The Protein Data Bank: a computer-based archival file for macromolecular structures

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Different sensitivities to acid denaturation within a family of proteins: implications for acid unfolding and membrane translocation.

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

The determinants of pKas in proteins

29 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

On the pH dependence of protein stability.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

The role of electrostatic charge in the membrane insertion of colicin A. Calculation and mutation.

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Classification of acid denaturation of proteins: intermediates and unfolded states

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Modeling charge interactions and redox properties in DsbA

17 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Improving pKa calculations with consideration of hydration entropy

3 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Modeling of protein conformational fluctuations in pKa predictions

3 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Measurement and modelling of sequence-specific pKa values of lysine residues in calbindin D9k

3 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

The dielectric constant of a folded protein

3 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Focusing of electric fields in the active site of Cu-Zn superoxide dismutase: effects of ionic strength and amino-acid modification

3 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Structure of the membrane-pore-forming fragment of colicin A

3 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2144253

Calculation of the electric potential in the active site cleft due to alpha-helix dipoles

1 December 2018

1 reference

12 December 2020

Electrostatic calculations and model-building suggest that DNA bound to CAP is sharply bent

1 reference

12 December 2020

Histidine-aromatic interactions in barnase. Elevation of histidine pKa and contribution to protein stability

1 reference

12 December 2020

Analysis of the acid-base titration curve of hen lysozyme

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.8.2.418

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10048335%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:10048335%20AND%20SRC:MED&resulttype=core&format=json

11 November 2019

PubMed publication ID

10048335

1 reference