Conformational equilibria of bulged sites in duplex DNA studied by EPR spectroscopy (Q42236765)

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6 February 2020

title

Conformational equilibria of bulged sites in duplex DNA studied by EPR spectroscopy (English)

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6 February 2020

author

Snorri Th. Sigurdsson

8

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6 February 2020

author name string

Alyssa L Smith

1

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6 February 2020

Pavol Cekan

2

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6 February 2020

Greg P Brewood

3

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6 February 2020

Tamara M Okonogi

4

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6 February 2020

Saba Alemayehu

5

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6 February 2020

Eric J Hustedt

6

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6 February 2020

Albert S Benight

7

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6 February 2020

Bruce H Robinson

9

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6 February 2020

language of work or name

English

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publication date

1 March 2009

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Journal of Physical Chemistry B

6 February 2020

published in

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6 February 2020

volume

113

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issue

9

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6 February 2020

page(s)

2664-2675

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Rigid spin-labeled nucleoside C: a nonperturbing EPR probe of nucleic acid conformation.

6 February 2020

cites work

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Bulged adenosine influence on the RNA duplex conformation in solution

26 October 2017

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DNA multiplex hybridization on microarrays and thermodynamic stability in solution: a direct comparison

26 October 2017

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The structure of a d(gcGAACgc) duplex containing two consecutive bulged A residues in both strands suggests a molecular switch

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Allele specific C-bulge probes with one unique fluorescent molecule discriminate the single nucleotide polymorphism in DNA.

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26 October 2017

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A more unified picture for the thermodynamics of nucleic acid duplex melting: a characterization by calorimetric and volumetric techniques

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26 October 2017

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A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

26 October 2017

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Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics

26 October 2017

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Molecular distances from dipolar coupled spin-labels: the global analysis of multifrequency continuous wave electron paramagnetic resonance data

26 October 2017

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Mutations that disrupt the carboxyl-terminus of gamma-sarcoglycan cause muscular dystrophy

26 October 2017

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Solution structure of a two-base DNA bulge complexed with an enediyne cleaving analog

26 October 2017

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Long-range interactions of multiple DNA structural transitions within a common topological domain

26 October 2017

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A VNTR immediately adjacent to the human pseudoautosomal telomere

26 October 2017

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Solution structure of a trinucleotide A-T-A bulge loop within a DNA duplex

26 October 2017

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Comparative NMR study of An-bulge loops in DNA duplexes: intrahelical stacking of A, A-A, and A-A-A bulge loops

29 May 2018

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Single base interrogation by a fluorescent nucleotide: each of the four DNA bases identified by fluorescence spectroscopy

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Nuclear magnetic resonance investigation of primer--template models: formation of a pyrimidine bulge upon misincorporation

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17 August 2018

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17 August 2018

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17 August 2018

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THEORY OF THE MELTING TRANSITION OF SYNTHETIC POLYNUCLEOTIDES: EVALUATION OF THE STACKING FREE ENERGY

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A nucleoside that contains a rigid nitroxide spin label: a fluorophore in disguise

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Multiple conformations coexist and interchange in natural B DNA fibers

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NMR structural refinement of an extrahelical adenosine tridecamer d(CGCAGAATTCGCG)2 via a hybrid relaxation matrix procedure

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Conformational transitions in thymidine bulge-containing deoxytridecanucleotide duplexes. Role of flanking sequence and temperature in modulating the equilibrium between looped out and stacked thymidine bulge states

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Identifiers

DOI

10.1021/JP808260B

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19708106%20AND%20SRC:MED&resulttype=core&format=json

6 February 2020

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6 February 2020

PubMed publication ID

19708106

1 reference