Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites (Q42419115)

30 October 2017

Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites (English)

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30 October 2017

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4

Chris Sander

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30 October 2017

5

Christina Leslie

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30 October 2017

Doron Betel

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30 October 2017

Anjali Koppal

series ordinal

2

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30 October 2017

Phaedra Agius

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3

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30 October 2017

27 August 2010

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30 October 2017

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30 October 2017

11

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30 October 2017

8

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30 October 2017

R90

1 reference

describes a project that uses

30 October 2017

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/2945792

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/gb-2010-11-8-r90

0 references

cites work

Signatures of RNA binding proteins globally coupled to effective microRNA target sites

1 reference

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Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

28 May 2018

1 reference

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Relative contribution of sequence and structure features to the mRNA binding of Argonaute/EIF2C-miRNA complexes and the degradation of miRNA targets

28 May 2018

1 reference

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Accurate microRNA target prediction correlates with protein repression levels

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

miR-24 Inhibits cell proliferation by targeting E2F2, MYC, and other cell-cycle genes via binding to "seedless" 3'UTR microRNA recognition elements

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

28 May 2018

1 reference

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Transfection of small RNAs globally perturbs gene regulation by endogenous microRNAs

28 May 2018

1 reference

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MicroRNAs: target recognition and regulatory functions

28 May 2018

1 reference

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mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts

28 May 2018

1 reference

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Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs

28 May 2018

1 reference

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Most mammalian mRNAs are conserved targets of microRNAs

28 May 2018

1 reference

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Widespread changes in protein synthesis induced by microRNAs

28 May 2018

1 reference

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The impact of microRNAs on protein output

28 May 2018

1 reference

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MicroRNA 21 promotes glioma invasion by targeting matrix metalloproteinase regulators

28 May 2018

1 reference

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Molecular architecture of a miRNA-regulated 3' UTR

28 May 2018

1 reference

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Systematic identification of mRNAs recruited to argonaute 2 by specific microRNAs and corresponding changes in transcript abundance

28 May 2018

1 reference

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LNA-mediated microRNA silencing in non-human primates

28 May 2018

1 reference

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Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?

28 May 2018

1 reference

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Antagonism of microRNA-122 in mice by systemically administered LNA-antimiR leads to up-regulation of a large set of predicted target mRNAs in the liver

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

RNA-binding protein Dnd1 inhibits microRNA access to target mRNA

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

The role of site accessibility in microRNA target recognition

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

Determinants of targeting by endogenous and exogenous microRNAs and siRNAs

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

28 May 2018

1 reference

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A mammalian microRNA expression atlas based on small RNA library sequencing

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

RNAhybrid: microRNA target prediction easy, fast and flexible

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

Micro-RNA regulation of the mammalian lin-28 gene during neuronal differentiation of embryonal carcinoma cells

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

Combinatorial microRNA target predictions

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

28 May 2018

Human MicroRNA targets

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

MicroRNA-directed cleavage of HOXB8 mRNA

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

MicroRNA targets in Drosophila

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

Micro RNAs are complementary to 3' UTR sequence motifs that mediate negative post-transcriptional regulation

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

The impact of target site accessibility on the design of effective siRNAs

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945792

A Genome-Wide Map of Conserved MicroRNA Targets in C. elegans

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20799968

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Perfect seed pairing is not a generally reliable predictor for miRNA-target interactions

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20799968

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2010-11-8-R90

1 reference

Dimensions Publication ID

30 October 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/gb-2010-11-8-r90

1 reference

30 October 2017

1 reference