Evolutionary constraints in conserved nongenic sequences of mammals. (Q42548494)

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7 January 2020

title

Evolutionary constraints in conserved nongenic sequences of mammals (English)

1 reference

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7 January 2020

main subject

evolutionary constraint

1 reference

4

1 reference

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7 January 2020

Daniel J Gaffney

series ordinal

5

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7 January 2020

1

Peter D Keightley

1 reference

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7 January 2020

author name string

Gregory V Kryukov

series ordinal

2

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7 January 2020

Shamil Sunyaev

series ordinal

3

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7 January 2020

publication date

1 October 2005

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7 January 2020

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7 January 2020

volume

15

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7 January 2020

issue

10

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7 January 2020

page(s)

1373-1378

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The scale of mutational variation in the murid genome

7 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Whole-genome patterns of common DNA variation in three human populations

28 May 2018

1 reference

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Evidence for widespread degradation of gene control regions in hominid genomes

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Highly conserved non-coding sequences are associated with vertebrate development

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Ultraconserved Elements in the Human Genome

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Comparison of human chromosome 21 conserved nongenic sequences (CNGs) with the mouse and dog genomes shows that their selective constraint is independent of their genic environment

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

MAVID: constrained ancestral alignment of multiple sequences

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

MCALIGN: stochastic alignment of noncoding DNA sequences based on an evolutionary model of sequence evolution

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Patterns of evolutionary constraints in intronic and intergenic DNA of Drosophila.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Identification and characterization of multi-species conserved sequences

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Scanning Human Gene Deserts for Long-Range Enhancers

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs).

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Comparative analyses of multi-species sequences from targeted genomic regions

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Compositional evolution of noncoding DNA in the human and chimpanzee genomes

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Initial sequencing and comparative analysis of the mouse genome

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Deterministic mutation rate variation in the human genome

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Evolutionarily conserved sequences on human chromosome 21

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Chromosomal location effects on gene sequence evolution in mammals

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Deleterious mutations and the evolution of sexual reproduction

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Deleterious mutations and the evolution of sex.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Numerous potentially functional but non-genic conserved sequences on human chromosome 21

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Quantifying the Slightly Deleterious Mutation Model of Molecular Evolution

1 December 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1240079

Mutation pattern variation among regions of the primate genome

1 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16204190

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.3942005

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16204190%20AND%20SRC:MED&resulttype=core&format=json

7 January 2020

1 reference

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7 January 2020

PubMed publication ID

16204190

1 reference