SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace. (Q42554402)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844979%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

title

SABBAC: online Structural Alphabet-based protein BackBone reconstruction from Alpha-Carbon trace (English)

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27 December 2019

1

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27 December 2019

Pierre Tuffery

series ordinal

3

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27 December 2019

author name string

R Gautier

series ordinal

2

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27 December 2019

language of work or name

English

0 references

publication date

1 July 2006

1 reference

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27 December 2019

published in

Nucleic Acids Research

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27 December 2019

volume

34

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27 December 2019

issue

Web Server issue

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27 December 2019

page(s)

W147-51

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Dependency between consecutive local conformations helps assemble protein structures from secondary structures using Go potential and greedy algorithm.

27 December 2019

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Critical assessment of methods of protein structure prediction (CASP)--round 6.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

TM-align: a protein structure alignment algorithm based on the TM-score

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Improved greedy algorithm for protein structure reconstruction.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

SCit: web tools for protein side chain conformation analysis

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

A hidden markov model derived structural alphabet for proteins.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Peptide backbone reconstruction using dead-end elimination and a knowledge-based forcefield

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

28 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Reconstruction of protein conformations from estimated positions of the C alpha coordinates

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

A molecular dynamics approach for the generation of complete protein structures from limited coordinate data.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Building proteins from C alpha coordinates using the dihedral probability grid Monte Carlo method

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Calculation of protein backbone geometry from alpha-carbon coordinates based on peptide-group dipole alignment

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Conversion from a virtual-bond chain to a complete polypeptide backbone chain.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Using known substructures in protein model building and crystallography

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Modelling the polypeptide backbone with 'spare parts' from known protein structures

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Rebuilding flavodoxin from C alpha coordinates: a test study

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

Accurate modeling of protein conformation by automatic segment matching

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

An efficient method for reconstructing protein backbones from alpha-carbon coordinates.

28 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

A fast method to sample real protein conformational space.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1538914

The building of protein structures from alpha-carbon coordinates

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16844979

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Construction of a full three-dimensional model of the transpeptidase domain of Streptococcus pneumoniae PBP2x starting from its Calpha-atom coordinates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16844979

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Energy-based reconstruction of a protein backbone from its alpha-carbon trace by a Monte-Carlo method

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16844979

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL289

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844979%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/MaupetitGT06

27 December 2019

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:16844979%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

PubMed publication ID

16844979

1 reference