Insights on protein-DNA recognition by coarse grain modelling (Q42631625)

4 November 2017

Insights on protein-DNA recognition by coarse grain modelling (English)

1 reference

4 November 2017

P Poulain

1

1 reference

4 November 2017

A Saladin

series ordinal

2

1 reference

4 November 2017

B Hartmann

series ordinal

3

1 reference

4 November 2017

C Prévost

series ordinal

4

1 reference

4 November 2017

1 November 2008

1 reference

Journal of Computational Chemistry

4 November 2017

1 reference

4 November 2017

29

1 reference

4 November 2017

15

1 reference

4 November 2017

2582-2592

1 reference

Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility

4 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Insertion and assembly of membrane proteins via simulation.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Molecular dynamics studies on free and bound targets of the bovine papillomavirus type I e2 protein: the protein binding effect on DNA and the recognition mechanism

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Docking macromolecules with flexible segments.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Protein-protein docking with a reduced protein model accounting for side-chain flexibility

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Structural studies of Ets-1/Pax5 complex formation on DNA

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

An overview of the structures of protein-DNA complexes

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Structural features of protein-nucleic acid recognition sites

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Origins of DNA-binding specificity: role of protein contacts with the DNA backbone

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Solution structure of the core NFATC1/DNA complex

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Subunit rearrangement accompanies sequence-specific DNA binding by the bovine papillomavirus-1 E2 protein

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Principles of protein-protein interactions

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Crystal structure of a yeast TBP/TATA-box complex

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Satisfying hydrogen bonding potential in proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

DNA recognition by beta-sheets in the Arc repressor-operator crystal structure

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

The definition of generalized helicoidal parameters and of axis curvature for irregular nucleic acids

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Crystal structure at 1.7 A of the bovine papillomavirus-1 E2 DNA-binding domain bound to its DNA target

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

The Protein Data Bank: a computer-based archival file for macromolecular structures

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

A coarse grain model for DNA.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Accounting for loop flexibility during protein-protein docking.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

ATTRACT: protein-protein docking in CAPRI using a reduced protein model.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Assessment of blind predictions of protein-protein interactions: current status of docking methods

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Modelling repressor proteins docking to DNA.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2904573

Modeling DNA structure, elasticity, and deformations at the base-pair level

16 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18478582

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A coarse-grained model for double-helix molecules in solution: spontaneous helix formation and equilibrium properties

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18478582

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/JCC.21014

1 reference

journals/jcc/PoulainSHP08

4 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

4 November 2017

PubMed publication ID

18478582

1 reference