Exploring skyline for both MS(E) -based label-free proteomics and HRMS quantitation of small molecules (Q42631665)

4 November 2017

Exploring skyline for both MS(E) -based label-free proteomics and HRMS quantitation of small molecules (English)

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4 November 2017

Shanshan Liu

1

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4 November 2017

Xin Chen

2

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4 November 2017

Zhihui Yan

3

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4 November 2017

Shanshan Qin

4

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4 November 2017

Jinhua Xu

5

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4 November 2017

Jianping Lin

6

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4 November 2017

Cheng Yang

7

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4 November 2017

Wenqing Shui

8

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4 November 2017

6 January 2014

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4 November 2017

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4 November 2017

14

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4 November 2017

2-3

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4 November 2017

169-180

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Metabolite identification and quantitation in LC-MS/MS-based metabolomics

4 November 2017

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Driving efficiency in a high-throughput metabolic stability assay through a generic high-resolution accurate mass method and automated data mining

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Sperm phosphoproteome profiling by ultra performance liquid chromatography followed by data independent analysis (LC-MS(E)) reveals altered proteomic signatures in asthenozoospermia

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Liquid chromatography/atmospheric pressure ionization-mass spectrometry in drug metabolism studies.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Post alignment clustering procedure for comparative quantitative proteomics LC-MS data

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Less label, more free: approaches in label-free quantitative mass spectrometry.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

An insight into iTRAQ: where do we stand now?

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Quantification of proteins using data-independent analysis (MSE) in simple andcomplex samples: a systematic evaluation

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Database searching and accounting of multiplexed precursor and product ion spectra from the data independent analysis of simple and complex peptide mixtures

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Precursor acquisition independent from ion count: how to dive deeper into the proteomics ocean.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Proteomics on an Orbitrap benchtop mass spectrometer using all-ion fragmentation

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Selected reaction monitoring-based proteomics: workflows, potential, pitfalls and future directions

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

MSQuant, an open source platform for mass spectrometry-based quantitative proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

i-Tracker: for quantitative proteomics using iTRAQ.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Improving qualitative and quantitative performance for MS(E)-based label-free proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Platform-independent and label-free quantitation of proteomic data using MS1 extracted ion chromatograms in skyline: application to protein acetylation and phosphorylation

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

High-throughput peptide identification from protein digests using data-dependent multiplexed tandem FTICR mass spectrometry coupled with capillary liquid chromatography.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS.

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Lipid profiling by multiple precursor and neutral loss scanning driven by the data-dependent acquisition

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Diffprot - software for non-parametric statistical analysis of differential proteomics data

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Reprogramming- and pluripotency-associated membrane proteins in mouse stem cells revealed by label-free quantitative proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

A structural view of the antibiotic degradation enzyme NDM-1 from a superbug

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Statistical significance for genomewide studies

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

An automated pipeline for high-throughput label-free quantitative proteomics

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Statistical protein quantification and significance analysis in label-free LC-MS experiments with complex designs

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Targeted proteomics of the eicosanoid biosynthetic pathway completes an integrated genomics-proteomics-metabolomics picture of cellular metabolism

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Alignment of LC-MS images, with applications to biomarker discovery and protein identification

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

Identification of inhibitors of the antibiotic-resistance target New Delhi metallo-β-lactamase 1 by both nanoelectrospray ionization mass spectrometry and ultrafiltration liquid chromatography/mass spectrometry approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201300352

Utility of Accurate Mass Tags for Proteome-Wide Protein Identification

21 January 2018

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https://api.crossref.org/works/10.1002%2FPMIC.201300352

21 January 2018

Identifiers

DOI

10.1002/PMIC.201300352

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4 November 2017

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