Efficient selection of branch-specific models of sequence evolution (Q42635599)

4 November 2017

title

Efficient selection of branch-specific models of sequence evolution (English)

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Emmanuel J P Douzery

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Vincent Ranwez

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Nicolas Galtier

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Jonathan Romiguier

series ordinal

3

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publication date

2 February 2012

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Molecular Biology and Evolution

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published in

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volume

29

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issue

7

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page(s)

1861-1874

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Dating phylogenies with hybrid local molecular clocks

4 November 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Parallel adaptations to high temperatures in the Archaean eon.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Nonadaptive evolution of mitochondrial genome size

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Genomes as documents of evolutionary history

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Efficient likelihood computations with nonreversible models of evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Why do species vary in their rate of molecular evolution?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Bayesian random local clocks, or one rate to rule them all

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Non-homogeneous models of sequence evolution in the Bio++ suite of libraries and programs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

A model-based approach for detecting coevolving positions in a molecule.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

A nonhyperthermophilic common ancestor to extant life forms

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Palaeotemperature trend for Precambrian life inferred from resurrected proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Adaptation to environmental temperature is a major determinant of molecular evolutionary rates in archaea

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Genomic and proteomic adaptations to growth at high temperature

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

SIMULATION FROM ENDPOINT-CONDITIONED, CONTINUOUS-TIME MARKOV CHAINS ON A FINITE STATE SPACE, WITH APPLICATIONS TO MOLECULAR EVOLUTION.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Inferring the root of a phylogenetic tree.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Reducing model complexity of the general Markov model of evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Phylogeny, recombination, and mechanisms of stepwise mitochondrial genome reorganization in mantellid frogs from Madagascar

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

A phylogenetic model for investigating correlated evolution of substitution rates and continuous phenotypic characters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Fast, accurate and simulation-free stochastic mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Transitions to asexuality result in excess amino acid substitutions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

APE: Analyses of Phylogenetics and Evolution in R language

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Detecting excess radical replacements in phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Detecting Site-Specific Physicochemical Selective Pressures: Applications to the Class I HLA of the Human Major Histocompatibility Complex and the SRK of the Plant Sporophytic Self-Incompatibility System

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Comparison of methods for calculating conditional expectations of sufficient statistics for continuous time Markov chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Exploring the potential of life-history key innovation: brook breeding in the radiation of the Malagasy treefrog genus Boophis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

PAML 4: phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Comparison of Likelihood and Bayesian Methods for Estimating Divergence Times Using Multiple Gene Loci and Calibration Points, with Application to a Radiation of Cute-Looking Mouse Lemur Species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

Dynamic programming procedure for searching optimal models to estimate substitution rates based on the maximum-likelihood method

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSS059

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MSS059

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4 November 2017

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