Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling (Q42651561)

4 November 2017

Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling (English)

1 reference

4 November 2017

1 reference

5

Anke Becker

1 reference

4 November 2017

Chandran Vijayendran

1

1 reference

4 November 2017

Aiko Barsch

2

1 reference

4 November 2017

Karl Friehs

3

1 reference

4 November 2017

Karsten Niehaus

4

1 reference

4 November 2017

Erwin Flaschel

6

1 reference

4 November 2017

10 April 2008

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4 November 2017

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4 November 2017

9

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4 November 2017

4

1 reference

4 November 2017

R72

1 reference

describes a project that uses

4 November 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/gb-2008-9-4-r72

0 references

cites work

ArrayExpress--a public database of microarray experiments and gene expression profiles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Long-term survival during stationary phase: evolution and the GASP phenotype

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

GMD@CSB.DB: the Golm Metabolome Database

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Parallel evolution and inheritance of quantitative traits

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Escherichia coli evolution during stationary phase

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Integrating high-throughput and computational data elucidates bacterial networks

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Stress-directed adaptive mutations and evolution

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

General stress response regulator RpoS in adaptive mutation and amplification in Escherichia coli

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Network biology: understanding the cell's functional organization

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Molecular basis of bacterial outer membrane permeability revisited

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Cytoscape: a software environment for integrated models of biomolecular interaction networks

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Microbial genetics: Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

An automated method for finding molecular complexes in large protein interaction networks

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Significance analysis of microarrays applied to the ionizing radiation response

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Experimental analysis of molecular events during mutational periodic selections in bacterial evolution.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Prolonged stationary-phase incubation selects for lrp mutations in Escherichia coli K-12

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Gene ontology: tool for the unification of biology

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Mutations enhancing amino acid catabolism confer a growth advantage in stationary phase

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Systematic changes in gene expression patterns following adaptive evolution in yeast

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Evolution of microbial diversity during prolonged starvation

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Genomic evolution during a 10,000-generation experiment with bacteria

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Exceptional convergent evolution in a virus.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Evolution of high mutation rates in experimental populations of E. coli

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populations

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Evolution of Escherichia coli during growth in a constant environment

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Role of gene duplications in the adaptation of Salmonella typhimurium to growth on limiting carbon sources

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

The Outer Membrane of Gram-negative Bacteria

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Stress-induced mutagenesis in bacteria

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Evolutionary changes in heat-inducible gene expression in lines of Escherichia coli adapted to high temperature

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

An analysis of multifactorial influences on the transcriptional control of ompF and ompC porin expression under nutrient limitation

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Rapid phenotypic change and diversification of a soil bacterium during 1000 generations of experimental evolution.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

The generation of multiple co-existing mal-regulatory mutations through polygenic evolution in glucose-limited populations of Escherichia coli

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

Adaptive mgl-regulatory mutations and genetic diversity evolving in glucose-limited Escherichia coli populations

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2643943

MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products

3 November 2018

1 reference

12 December 2020

Construction and validation of a Sinorhizobium meliloti whole genome DNA microarray: genome-wide profiling of osmoadaptive gene expression

1 reference

12 December 2020

High Deleterious Genomic Mutation Rate in Stationary Phase of Escherichia coli

1 reference

12 December 2020

Metabolite profiling: from diagnostics to systems biology

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB-2008-9-4-R72

1 reference

Dimensions Publication ID

4 November 2017

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/gb-2008-9-4-r72

Fatcat ID

release_2dmujktiobb23fkioyzv5warem

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/2dmujktiobb23fkioyzv5warem

24 November 2022

mapped directly with Wikidata item

1 reference

4 November 2017

1 reference