SPINAL: scalable protein interaction network alignment (Q42687580)

4 November 2017

SPINAL: scalable protein interaction network alignment (English)

1 reference

4 November 2017

Ahmet E Aladag

1

1 reference

PubMed ID

23413436

4 November 2017

Cesim Erten

series ordinal

2

1 reference

PubMed ID

23413436

4 November 2017

language of work or name

English

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publication date

14 February 2013

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4 November 2017

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4 November 2017

29

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4 November 2017

917-924

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4 November 2017

7

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Mass spectrometry-based proteomics

4 November 2017

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Gene ontology: tool for the unification of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

SubMAP: aligning metabolic pathways with subnetwork mappings

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Analyzing yeast protein-protein interaction data obtained from different sources

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Systematic identification of functional orthologs based on protein network comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

NetGrep: fast network schema searches in interactomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

QNet: a tool for querying protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Identification of functional modules from conserved ancestral protein-protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Interaction mating reveals binary and ternary connections between Drosophila cell cycle regulators.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Graemlin: general and robust alignment of multiple large interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Connectedness of PPI network neighborhoods identifies regulatory hub proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Co-evolutionary analysis reveals insights into protein-protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Evidence for dynamically organized modularity in the yeast protein-protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Evolutionary rate in the protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Conserved pathways within bacteria and yeast as revealed by global protein network alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

PathBLAST: a tool for alignment of protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

A new graph-based method for pairwise global network alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Pairwise alignment of protein interaction networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Integrative network alignment reveals large regions of global network similarity in yeast and human

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Topological network alignment uncovers biological function and phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

IsoRankN: spectral methods for global alignment of multiple protein networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

A statistical model of protein sequence similarity and function similarity reveals overly-specific function predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Optimal network alignment with graphlet degree vectors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Comparing protein interaction networks via a graph match-and-split algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

IsoBase: a database of functionally related proteins across PPI networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Alignment of metabolic pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Maximum common subgraph isomorphism algorithms for the matching of chemical structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

A network synthesis model for generating protein interaction network families

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Modeling cellular machinery through biological network comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Conserved patterns of protein interaction in multiple species

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Network-based prediction of protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

QPath: a method for querying pathways in a protein-protein interaction network

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

Global alignment of protein-protein interaction networks by graph matching methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTT071

10.1093/BIOINFORMATICS/BTT071

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/AladagE13

4 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

23413436