A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon (Q42689207)

4 November 2017

A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon (English)

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4 November 2017

1

Truus E M Abbink

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4 November 2017

Ben Berkhout

2

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PubMed ID

12458192

4 November 2017

language of work or name

English

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publication date

27 November 2002

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Journal of Biological Chemistry

4 November 2017

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4 November 2017

278

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4 November 2017

13

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4 November 2017

11601-11611

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The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein

4 November 2017

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

A 1.3-A resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Structural features in TAR RNA of human and simian immunodeficiency viruses: a phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Human immunodeficiency virus 1 tat protein binds trans-activation-responsive region (TAR) RNA in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Tat trans-activates the human immunodeficiency virus through a nascent RNA target

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Inhibition of polyadenylation by stable RNA secondary structure

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M210291200

The ability of the HIV-1 AAUAAA signal to bind polyadenylation factors is controlled by local RNA structure

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M210291200

Initiation of HIV-1 reverse transcription is regulated by a primer activation signal

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M210291200

The tRNA primer activation signal in the human immunodeficiency virus type 1 genome is important for initiation and processive elongation of reverse transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

A 19-nucleotide sequence upstream of the 5' major splice donor is part of the dimerization domain of human immunodeficiency virus 1 genomic RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Two strong 5' splice sites and competing, suboptimal 3' splice sites involved in alternative splicing of human immunodeficiency virus type 1 RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Structure of SL4 RNA from the HIV-1 packaging signal

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Two alternating structures of the HIV-1 leader RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Identification of the primary site of the human immunodeficiency virus type 1 RNA dimerization in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Evidence that a kissing loop structure facilitates genomic RNA dimerisation in HIV-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

The major HIV-1 packaging signal is an extended bulged stem loop whose structure is altered on interaction with the Gag polyprotein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Forced evolution of a regulatory RNA helix in the HIV-1 genome

21 January 2018

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https://api.crossref.org/works/10.1074%2FJBC.M210291200

RNA packaging signal of human immunodeficiency virus type 1

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Elucidation of a conserved RNA stem-loop structure in the packaging signal of human immunodeficiency virus type 1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Base pairing probabilities in a complete HIV-1 RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Structure and stability of wild-type and mutant RNA internal loops from the SL-1 domain of the HIV-1 packaging signal

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

The leader of the HIV-1 RNA genome forms a compactly folded tertiary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Mutations in the TAR hairpin affect the equilibrium between alternative conformations of the HIV-1 leader RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Multiple secondary structure rearrangements during HIV-1 RNA dimerization

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Pestivirus internal ribosome entry site (IRES) structure and function: elements in the 5' untranslated region important for IRES function

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

A universal mode of helix packing in RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Destiny of Unspliced Retroviral RNA: Ribosome and/or Virion?

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Alternative structures of the cauliflower mosaic virus 35 S RNA leader: implications for viral expression and replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Mapping the RNA binding sites for human immunodeficiency virus type-1 gag and NC proteins within the complete HIV-1 and -2 untranslated leader regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop SL2 of the psi-RNA packaging signal. Implications for genome recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Multiple biological roles associated with the repeat (R) region of the HIV-1 RNA genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Stem-loop SL4 of the HIV-1 Ψ RNA packaging signal exhibits weak affinity for the nucleocapsid protein. structural studies and implications for genome recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Dimerization of HIV-1Lai RNA at low ionic strength. An autocomplementary sequence in the 5' leader region is evidenced by an antisense oligonucleotide

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

HIV-1 genome dimerization: formation kinetics and thermal stability of dimeric HIV-1Lai RNAs are not improved by the 1-232 and 296-790 regions flanking the kissing-loop domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

A kissing complex together with a stable dimer is involved in the HIV-1Lai RNA dimerization process in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

Requirements for DNA strand transfer during reverse transcription in mutant HIV-1 virions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M210291200

21 January 2018

Identifiers

DOI

10.1074/JBC.M210291200

1 reference

4 November 2017

1 reference

PubMed ID

12458192