The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures (Q42849173)

8 November 2017

The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures (English)

1 reference

8 November 2017

Nir Ben-Tal

4

0 references

author name string

Ofir Goldenberg

series ordinal

1

1 reference

8 November 2017

Elana Erez

series ordinal

2

1 reference

8 November 2017

Guy Nimrod

series ordinal

3

1 reference

8 November 2017

language of work or name

English

0 references

publication date

29 October 2008

1 reference

8 November 2017

Nucleic Acids Research

1 reference

8 November 2017

37

1 reference

8 November 2017

Database issue

1 reference

8 November 2017

D323-7

1 reference

Proteopedia - a scientific 'wiki' bridging the rift between three-dimensional structure and function of biomacromolecules

8 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

The universal protein resource (UniProt)

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

siteFiNDER|3D: a web-based tool for predicting the location of functional sites in proteins

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

HotPatch: a statistical approach to finding biologically relevant features on protein surfaces

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

ET viewer: an application for predicting and visualizing functional sites in protein structures

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

The ConSurf-HSSP database: the mapping of evolutionary conservation among homologs onto PDB structures.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

MUSCLE: multiple sequence alignment with high accuracy and high throughput

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

Recent changes to RasMol, recombining the variants

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

27 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

The HSSP database of protein structure-sequence alignments and family profiles

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

The neighbor-joining method: a new method for reconstructing phylogenetic trees

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

The rapid generation of mutation data matrices from protein sequences

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

Prediction of active sites for protein structures from computed chemical properties.

27 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2686473

Distributed computing in practice: the Condor experience

16 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN822

Structural clusters of evolutionary trace residues are statistically significant and common in proteins

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18971256

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Sequence variability analysis of human class I and class II MHC molecules: functional and structural correlates of amino acid polymorphisms

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18971256

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN822

1 reference

journals/nar/GoldenbergENB09

8 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

8 November 2017

1 reference