Aromatic-proline interactions: electronically tunable CH/π interactions (Q42971573)

12 November 2017

Aromatic-proline interactions: electronically tunable CH/π interactions (English)

1 reference

12 November 2017

Neal J Zondlo

1

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PMCID

3780429

12 November 2017

language of work or name

English

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publication date

13 November 2012

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Accounts of Chemical Research

12 November 2017

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12 November 2017

46

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12 November 2017

4

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12 November 2017

1039-1049

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Synthesis of thiophenylalanine-containing peptides via Cu(I)-mediated cross-coupling

12 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Aromatic rings in chemical and biological recognition: energetics and structures

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Inductive Effects on the Energetics of Prolyl Peptide Bond Isomerization: Implications for Collagen Folding and Stability

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Plant polyphenols: chemical properties, biological activities, and synthesis

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Thermodynamic Origin of Prolyl Peptide Bond Isomers

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Aromatic interactions promote self-association of collagen triple-helical peptides to higher-order structures

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Phenylalanine promotes interaction of transmembrane domains via GxxxG motifs

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Structural basis for recognition of high mannose type glycoproteins by mammalian transport lectin VIP36

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Stereoelectronic tuning of the structure and stability of the trp cage miniprotein.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Electrostatic control of aromatic stacking interactions

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

The tryptophan switch: changing ligand-binding specificity from type I to type II in SH3 domains

26 May 2018

1 reference

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The Structure and Function of Proline Recognition Domains

26 May 2018

1 reference

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Interactions with aromatic rings in chemical and biological recognition

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Designing a 20-residue protein

26 May 2018

1 reference

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Effect of sequence on peptide geometry in 5-tert-butylprolyl type VI beta-turn mimics.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

The Cationminus signpi Interaction

26 May 2018

1 reference

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The interrelationships of side-chain and main-chain conformations in proteins.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Amino acid propensities for the collagen triple-helix

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

The cisproline(i - 1)-aromatic(i) interaction: folding of the Ala-cisPro-Tyr peptide characterized by NMR and theoretical approaches

26 May 2018

1 reference

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Comparative genomics of the eukaryotes

26 May 2018

1 reference

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The importance of being proline: the interaction of proline-rich motifs in signaling proteins with their cognate domains

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Three-dimensional structure of a type VI turn in a linear peptide in water solution. Evidence for stacking of aromatic rings as a major stabilizing factor

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Stabilization of a type VI turn in a family of linear peptides in water solution

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

The refined structure of the quinoprotein methanol dehydrogenase from Methylobacterium extorquens at 1.94 A

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

High-resolution crystal structures of tyrosine kinase SH3 domains complexed with proline-rich peptides

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Critical residues in an SH3 domain from Sem-5 suggest a mechanism for proline-rich peptide recognition

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Refined crystal structures of unligated adenylosuccinate synthetase from Escherichia coli

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Folding of immunogenic peptide fragments of proteins in water solution. I. Sequence requirements for the formation of a reverse turn

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Occurrence and role of cis peptide bonds in protein structures

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Influence of proline residues on protein conformation

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

The X-Pro peptide bond as an nmr probe for conformational studies of flexible linear peptides

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

A propensity scale for type II polyproline helices (PPII): aromatic amino acids in proline-rich sequences strongly disfavor PPII due to proline-aromatic interactions

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Direct evidence for CH···π interaction mediated stabilization of Pro-cisPro bond in peptides with Pro-Pro-aromatic motifs.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Proline-rich proteins--deriving a basis for residue-based selectivity in polyphenolic binding

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Electronic control of amide cis-trans isomerism via the aromatic-prolyl interaction

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Effects of i and i+3 residue identity on cis-trans isomerism of the aromatic(i+1)-prolyl(i+2) amide bond: implications for type VI beta-turn formation

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Stereospecific interactions of proline residues in protein structures and complexes

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Multiple conformations of the proline-rich protein/epigallocatechin gallate complex determined by time-averaged nuclear Overhauser effects

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Stabilization of local structures by pi-CH and aromatic-backbone amide interactions involving prolyl and aromatic residues

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Conformational stability of collagen relies on a stereoelectronic effect.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Side-chain effects on peptidyl-prolyl cis/trans isomerisation.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Multiple Interactions between Polyphenols and a Salivary Proline-Rich Protein Repeat Result in Complexation and Precipitation†

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3780429

Proline editing: a divergent strategy for the synthesis of conformationally diverse peptides

1 December 2018

1 reference

12 December 2020

Enhanced stability of cis Pro-Pro peptide bond in Pro-Pro-Phe sequence motif

1 reference

12 December 2020

Local structure due to an aromatic-amide interaction observed by 1H-nuclear magnetic resonance spectroscopy in peptides related to the N terminus of bovine pancreatic trypsin inhibitor

1 reference

12 December 2020

Fluoroprolines as Tools for Protein Design and Engineering We thank Mrs. E. Weyher for skillful technical assistance in spectroscopic analyses and Mrs. W. Wenger for her excellent technical assistance in protein preparation. We are indebted to Dr. R

1 reference

12 December 2020

Cis peptide bonds in proteins: residues involved, their conformations, interactions and locations

1 reference

12 December 2020

C-H...pi-interactions in proteins

1 reference

12 December 2020

Crystal structure of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8

1 reference

12 December 2020

CH/pi interaction in the conformation of peptides. A database study

1 reference

12 December 2020

Local conformations of peptides representing the entire sequence of bovine pancreatic trypsin inhibitor and their roles in folding

1 reference

12 December 2020

The physical properties of local interactions of tyrosine residues in peptides and unfolded proteins

1 reference

12 December 2020

Local control of peptide conformation: stabilization of cis proline peptide bonds by aromatic proline interactions

1 reference

12 December 2020

Factors affecting conformation in proline-containing peptides

1 reference

12 December 2020

Identifiers

DOI

10.1021/AR300087Y

1 reference

12 November 2017

1 reference

12 November 2017

1 reference

PMCID

3780429