Multi-omic landscape of rheumatoid arthritis: re-evaluation of drug adverse effects (Q42975335)

12 November 2017

Multi-omic landscape of rheumatoid arthritis: re-evaluation of drug adverse effects (English)

1 reference

12 November 2017

1 reference

1

1 reference

12 November 2017

4

1 reference

12 November 2017

XiaoYuan Zhou

2

1 reference

12 November 2017

Lisha Zhu

series ordinal

3

1 reference

12 November 2017

4 November 2014

1 reference

Frontiers in Cell and Developmental Biology

12 November 2017

1 reference

12 November 2017

2

1 reference

12 November 2017

59

1 reference

describes a project that uses

12 November 2017

Cytoscape

object named as

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

affy

object named as

affy package

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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26 May 2018

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Periodontal treatment decreases levels of antibodies to Porphyromonas gingivalis and citrulline in patients with rheumatoid arthritis and periodontitis.

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The dynamics of gut-associated microbial communities during inflammation

26 May 2018

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Periodontal disease and rheumatoid arthritis: the evidence accumulates for complex pathobiologic interactions

26 May 2018

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The human gut microbiome and body metabolism: implications for obesity and diabetes

26 May 2018

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Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases

26 May 2018

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A(2A) adenosine receptors are differentially modulated by pharmacological treatments in rheumatoid arthritis patients and their stimulation ameliorates adjuvant-induced arthritis in rats

26 May 2018

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26 May 2018

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26 May 2018

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Periodontitis in established rheumatoid arthritis patients: a cross-sectional clinical, microbiological and serological study

26 May 2018

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Functional interactions between the gut microbiota and host metabolism

26 May 2018

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Reciprocal interactions of the intestinal microbiota and immune system.

26 May 2018

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Diversity, stability and resilience of the human gut microbiota

26 May 2018

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Integrating gene expression and protein-protein interaction network to prioritize cancer-associated genes

26 May 2018

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Porphyromonas gingivalis and disease-related autoantibodies in individuals at increased risk of rheumatoid arthritis

26 May 2018

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DNA methylome signature in rheumatoid arthritis

26 May 2018

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Adenosine receptor expression in rheumatoid synovium: a basis for methotrexate action

26 May 2018

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Periodontal disease and the oral microbiota in new-onset rheumatoid arthritis

26 May 2018

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Microbes-induced EMT at the crossroad of inflammation and cancer

26 May 2018

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Charting the NF-κB pathway interactome map

26 May 2018

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NF-κB, the first quarter-century: remarkable progress and outstanding questions

26 May 2018

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Periodontitis, Porphyromonas, and the pathogenesis of rheumatoid arthritis

26 May 2018

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Drug discovery in the age of systems biology: the rise of computational approaches for data integration.

26 May 2018

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The pathogenesis of rheumatoid arthritis

26 May 2018

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A2A and A3 adenosine receptor expression in rheumatoid arthritis: upregulation, inverse correlation with disease activity score and suppression of inflammatory cytokine and metalloproteinase release

26 May 2018

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The microbiome and rheumatoid arthritis

26 May 2018

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Crosstalk in NF-κB signaling pathways

26 May 2018

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Hierarchies of NF-κB target-gene regulation

26 May 2018

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Negative regulation of NF-κB and its involvement in rheumatoid arthritis

26 May 2018

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Epigenetic deregulation in rheumatoid arthritis.

26 May 2018

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Increased sensitivity to apoptosis induced by methotrexate is mediated by JNK.

26 May 2018

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miRWalk--database: prediction of possible miRNA binding sites by "walking" the genes of three genomes

26 May 2018

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NCBI GEO: archive for functional genomics data sets--10 years on

26 May 2018

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Therapeutic antibodies directed at G protein-coupled receptors

26 May 2018

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The role of adenosine receptors in rheumatoid arthritis.

26 May 2018

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Leptin potentiates Prevotella intermedia lipopolysaccharide-induced production of TNF-alpha in monocyte-derived macrophages

26 May 2018

1 reference

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Genome-wide association study meta-analysis identifies seven new rheumatoid arthritis risk loci

26 May 2018

1 reference

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A comprehensive molecular interaction map for rheumatoid arthritis

26 May 2018

1 reference

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Data integration and analysis of biological networks

26 May 2018

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BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

26 May 2018

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The Universal Protein Resource (UniProt) in 2010

26 May 2018

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Expression and function of the NALP3 inflammasome in rheumatoid synovium.

26 May 2018

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Epigenetics in rheumatoid arthritis.

26 May 2018

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PPI spider: a tool for the interpretation of proteomics data in the context of protein-protein interaction networks

26 May 2018

1 reference

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Identifying disease associations via genome-wide association studies

26 May 2018

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Comparison of small n statistical tests of differential expression applied to microarrays

26 May 2018

1 reference

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

26 May 2018

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Targeting NF-kappaB: a promising molecular therapy in inflammatory arthritis.

26 May 2018

1 reference

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InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

26 May 2018

1 reference

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The knowledge-integrated network biomarkers discovery for major adverse cardiac events

26 May 2018

1 reference

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Identifying functional modules in protein-protein interaction networks: an integrated exact approach

26 May 2018

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Network-guided genetic screening: building, testing and using gene networks to predict gene function

26 May 2018

1 reference

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Signalling, inflammation and arthritis: crossed signals: the role of interleukin (IL)-12, -17, -23 and -27 in autoimmunity.

26 May 2018

1 reference

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Signalling, inflammation and arthritis: NF-kappaB and its relevance to arthritis and inflammation.

26 May 2018

1 reference

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Grb2 binding to Tyr284 in TbetaR-II is essential for mammary tumor growth and metastasis stimulated by TGF-beta

26 May 2018

1 reference

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Inflammasomes and rheumatic diseases: evolving concepts

26 May 2018

1 reference

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Genes2Networks: connecting lists of gene symbols using mammalian protein interactions databases

26 May 2018

1 reference

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Characterization of protein-interaction networks in tumors

26 May 2018

1 reference

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Network-based analysis of affected biological processes in type 2 diabetes models

26 May 2018

1 reference

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NF-kappaB and rheumatic diseases

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

APID: Agile Protein Interaction DataAnalyzer

26 May 2018

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NF-kappaB as a potential therapeutic target in osteoarthritis and rheumatoid arthritis

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

affy--analysis of Affymetrix GeneChip data at the probe level

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Leptin consumption in the inflamed joints of patients with rheumatoid arthritis

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Summaries of Affymetrix GeneChip probe level data

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

The anti-inflammatory actions of methotrexate are critically dependent upon the production of reactive oxygen species

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Grb2 is a key mediator of helicobacter pylori CagA protein activities

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Is NF-kappaB a useful therapeutic target in rheumatoid arthritis?

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Molecular action of methotrexate in inflammatory diseases

26 May 2018

1 reference

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Integrating genotype and phenotype information: an overview of the PharmGKB project. Pharmacogenetics Research Network and Knowledge Base

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Anti-inflammatory mechanisms of methotrexate in rheumatoid arthritis

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

NF-kappa B in rheumatoid arthritis: a pivotal regulator of inflammation, hyperplasia, and tissue destruction

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Helicobacter pylori--a trigger of reactive arthritis?

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

NF-kappaB activation provides the potential link between inflammation and hyperplasia in the arthritic joint

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Evidence of NLRP3-inflammasome activation in rheumatoid arthritis (RA); genetic variants within the NLRP3-inflammasome complex in relation to susceptibility to RA and response to anti-TNF treatment.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

A preclinical study on the protective effect of melatonin against methotrexate-induced small intestinal damage: effect mediated by attenuation of nitrosative stress, protein tyrosine nitration, and PARP activation

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Immune complex-mediated cell activation from systemic lupus erythematosus and rheumatoid arthritis patients elaborate different requirements for IRAK1/4 kinase activity across human cell types

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Methotrexate-induced nitrosative stress may play a critical role in small intestinal damage in the rat.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

A navigator for human genome epidemiology.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Computing topological parameters of biological networks.

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

APID2NET: unified interactome graphic analyzer

16 August 2018

1 reference

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Identification of proteins differentially expressed in human monocytes exposed to Porphyromonas gingivalis and its purified components by high-throughput immunoblotting

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Leptin activates STAT and ERK2 pathways and induces gastric cancer cell proliferation

16 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4220167

Regulation of GRB2 and FLICE2 expression by TNF-alpha in rheumatoid synovium.

16 August 2018

1 reference

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Unifying the integration, analysis and interpretation of multi-omic datasets: Exploration of the disease networks of Obstructive Nephropathy in children

16 August 2018

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Crossref

https://api.crossref.org/works/10.3389%2FFCELL.2014.00059

Integrative biology--the way forward

21 January 2018

1 reference

12 December 2020

Lactobacilli and Streptococci activate NF-kappa B and STAT signaling pathways in human macrophages

1 reference

12 December 2020

Methotrexate attenuates the Th17/IL-17 levels in peripheral blood mononuclear cells from healthy individuals and RA patients

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12 December 2020

Role of Th17 cells in human autoimmune arthritis

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12 December 2020

Identifiers

DOI

10.3389/FCELL.2014.00059

1 reference

12 November 2017

1 reference

12 November 2017

PubMed publication ID

25414848

1 reference