Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions (Q43063724)

13 November 2017

Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions (English)

1 reference

13 November 2017

1

1 reference

13 November 2017

2

1 reference

13 November 2017

Sandor Vajda

3

1 reference

PMCID

2732220

13 November 2017

language of work or name

English

0 references

publication date

30 June 2008

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13 November 2017

1 reference

13 November 2017

24

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13 November 2017

17

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13 November 2017

1865-1873

1 reference

Recent Progress and Future Directions in Protein-Protein Docking

13 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Docking essential dynamics eigenstructures

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Protein-Protein Docking Benchmark 2.0: an update

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Optimal clustering for detecting near-native conformations in protein docking

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

26 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Functional organization of the yeast proteome by systematic analysis of protein complexes

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

A comprehensive two-hybrid analysis to explore the yeast protein interactome

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Modelling protein docking using shape complementarity, electrostatics and biochemical information

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

ADP_EM: fast exhaustive multi-resolution docking for high-throughput coverage.

26 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

PIPER: an FFT-based protein docking program with pairwise potentials.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Evaluation of protein docking predictions using Hex 3.1 in CAPRI rounds 1 and 2.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

ZDOCK: an initial-stage protein-docking algorithm.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Assessment of blind predictions of protein-protein interactions: current status of docking methods

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Protein docking using spherical polar Fourier correlations.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2732220

Complementarity of Structure Ensembles in Protein-Protein Binding

15 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN334

The relationship between the flexibility of proteins and their conformational states on forming protein-protein complexes with an application to protein-protein docking

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18591193

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Protein docking using continuum electrostatics and geometric fit

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18591193

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Fast rotational matching of rigid bodies by fast Fourier transform acceleration of five degrees of freedom

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18591193

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIOINFORMATICS/BTN334

1 reference

journals/bioinformatics/RitchieKV08

13 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

13 November 2017

1 reference

PMCID

2732220