Characterizing the protonation state of cytosine in transient G·C Hoogsteen base pairs in duplex DNA. (Q43089295)

13 November 2017

Characterizing the protonation state of cytosine in transient G·C Hoogsteen base pairs in duplex DNA. (English)

1 reference

13 November 2017

0 references

3

Charles L Brooks

1 reference

13 November 2017

Evgenia N Nikolova

1

1 reference

13 November 2017

Garrett B Goh

series ordinal

2

1 reference

13 November 2017

Hashim M Al-Hashimi

series ordinal

4

1 reference

13 November 2017

language of work or name

English

0 references

publication date

29 April 2013

1 reference

Journal of the American Chemical Society

13 November 2017

1 reference

13 November 2017

135

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13 November 2017

18

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13 November 2017

6766-6769

1 reference

pH-dependent dynamics of complex RNA macromolecules

13 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Thermodynamic coupling of protonation and conformational equilibria in proteins: theory and simulation

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Constant pH Molecular Dynamics Simulations of Nucleic Acids in Explicit Solvent

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Solution structure of a minor and transiently formed state of a T4 lysozyme mutant

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Transient Hoogsteen base pairs in canonical duplex DNA.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Driving forces for nucleic acid pK(a) shifting in an A(+).C wobble: effects of helix position, temperature, and ionic strength

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Characterization of the dynamics of biomacromolecules using rotating-frame spin relaxation NMR spectroscopy

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Off-resonance R(1rho) NMR studies of exchange dynamics in proteins with low spin-lock fields: an application to a Fyn SH3 domain

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

TATA element recognition by the TATA box-binding protein has been conserved throughout evolution

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

The role of the AT pairs in the acid denaturation of DNA

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Probing transient Hoogsteen hydrogen bonds in canonical duplex DNA using NMR relaxation dispersion and single-atom substitution

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Human DNA polymerase iota incorporates dCTP opposite template G via a G.C + Hoogsteen base pair

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

DNA polymerases: Hoogsteen base-pairing in DNA replication?

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Simple method for determining nucleobase pK(a) values by indirect labeling and demonstration of a pK(a) of neutrality in dsDNA.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3713198

Sites and thermodynamic quantities associated with proton and metal ion interaction with ribonucleic acid, deoxyribonucleic acid, and their constituent bases, nucleosides, and and nucleotides

15 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23506098

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The molecular structure of a DNA-triostin A complex

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23506098

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The contribution of cytosine protonation to the stability of parallel DNA triple helices

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23506098

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/JA400994E

1 reference

13 November 2017

1 reference

13 November 2017

1 reference