RNA SHAPE analysis in living cells (Q43099400)

13 November 2017

RNA SHAPE analysis in living cells (English)

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13 November 2017

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3

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13 November 2017

5

Eric T Kool

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13 November 2017

Robert C Spitale

1

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13 November 2017

Pete Crisalli

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2

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13 November 2017

Eduardo A Torre

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4

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13 November 2017

Howard Y Chang

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6

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13 November 2017

25 November 2012

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13 November 2017

Nature Chemical Biology

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13 November 2017

9

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13 November 2017

1

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13 November 2017

18-20

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https://scigraph.springernature.com/pub.10.1038/nchembio.1131

13 November 2017

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cites work

Systematic discovery of structural elements governing stability of mammalian messenger RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

A two-dimensional mutate-and-map strategy for non-coding RNA structure

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

The structure of the eukaryotic ribosome at 3.0 Å resolution

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Prospects for riboswitch discovery and analysis

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Exploring RNA structural codes with SHAPE chemistry

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

RNA templating the epigenome: long noncoding RNAs as molecular scaffolds

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Non-coding RNAs: regulators of disease

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Architecture and secondary structure of an entire HIV-1 RNA genome

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Coding-sequence determinants of gene expression in Escherichia coli

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Accurate SHAPE-directed RNA structure determination

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

DMS footprinting of structured RNAs and RNA-protein complexes

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Saturation mutagenesis of 5S rRNA in Saccharomyces cerevisiae.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Non-coding RNAs: the architects of eukaryotic complexity

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Crystal structure of the ribosome at 5.5 A resolution

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Nuclease footprint analyses of the interactions between RNase P ribozyme and a model mRNA substrate

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

In vitro and in vivo secondary structure probing of the thrS leader in Bacillus subtilis.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

The 5S rRNA loop E: chemical probing and phylogenetic data versus crystal structure

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Three-dimensional model of Escherichia coli ribosomal 5 S RNA as deduced from structure probing in solution and computer modeling.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Kinetics and thermodynamics make different contributions to RNA folding in vitro and in yeast

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3706714

Deconstructing the dogma: a new view of the evolution and genetic programming of complex organisms.

15 August 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1131

Defining the inside and outside of a catalytic RNA molecule

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1131

Advances in RNA structure analysis by chemical probing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1131

Definition of a high-affinity Gag recognition structure mediating packaging of a retroviral RNA genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1131

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1131

Mfold web server for nucleic acid folding and hybridization prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1131

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNCHEMBIO.1131

inferred from DOI database lookup

7 January 2021

based on heuristic

Identifiers

DOI

10.1038/NCHEMBIO.1131

1 reference

Dimensions Publication ID

13 November 2017

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13 November 2017

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