SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins (Q43103622)

13 November 2017

SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins (English)

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13 November 2017

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2

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13 November 2017

7

Robert Preissner

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Björn A Grüning

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object named as

Bjoern Gruening

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author name string

Peter W Hildebrand

1

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13 November 2017

Raphael A Bauer

3

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13 November 2017

Bjoern Gruening

4

1 reference

13 November 2017

Jochen Ismer

5

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13 November 2017

Elke Michalsky

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13 November 2017

language of work or name

English

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publication date

8 May 2009

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13 November 2017

Nucleic Acids Research

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13 November 2017

37

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13 November 2017

Web Server issue

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13 November 2017

W571-4

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Crystal structure of opsin in its G-protein-interacting conformation

13 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Toward high-resolution prediction and design of transmembrane helical protein structures

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Modeling protein loops with knowledge-based prediction of sequence-structure alignment.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Loop modeling: Sampling, filtering, and scoring

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Loopholes and missing links in protein modeling

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

ArchPRED: a template based loop structure prediction server.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Protein loop structure prediction with flexible stem geometries.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Prediction of the conformation and geometry of loops in globular proteins: testing ArchDB, a structural classification of loops.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

A hierarchical approach to all-atom protein loop prediction

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

ModLoop: automated modeling of loops in protein structures

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Discrimination of native loop conformations in membrane proteins: decoy library design and evaluation of effective energy scoring functions.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

25 May 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Toward better refinement of comparative models: predicting loops in inexact environments

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

LOOPER: a molecular mechanics-based algorithm for protein loop prediction

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Prediction of protein loop geometries in solution.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Long loop prediction using the protein local optimization program.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

A combinatorial pattern discovery approach for the prediction of membrane dipping (re-entrant) loops.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

The third extracellular loop of G-protein-coupled receptors: more than just a linker between two important transmembrane helices.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Loops In Proteins (LIP)--a comprehensive loop database for homology modelling.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Structural features of transmembrane helices.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703960

Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions

15 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19429894

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP338

1 reference

journals/nar/HildebrandGBGIMP09

13 November 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

13 November 2017

PubMed publication ID

19429894

1 reference