A software pipeline for processing and identification of fungal ITS sequences (Q43171943)

15 November 2017

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title

A software pipeline for processing and identification of fungal ITS sequences (English)

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15 November 2017

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1

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15 November 2017

3

Martin Ryberg

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15 November 2017

Gunilla Bok

2

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15 November 2017

Erik Kristiansson

series ordinal

4

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15 November 2017

Nils Hallenberg

series ordinal

5

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15 November 2017

language of work or name

English

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publication date

15 January 2009

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Source Code for Biology and Medicine

15 November 2017

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15 November 2017

4

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15 November 2017

1

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13 September 2019

page(s)

1

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Creative Commons Attribution 2.0 Generic

15 November 2017

start time

15 January 2009

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1751-0473-4-1

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cites work

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DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

25 May 2018

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Mining metadata from unidentified ITS sequences in GenBank: a case study in Inocybe (Basidiomycota).

25 May 2018

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25 May 2018

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After the gold rush, or before the flood? Evolutionary morphology of mushroom-forming fungi (Agaricomycetes) in the early 21st century

25 May 2018

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25 May 2018

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25 May 2018

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HitKeeper, a generic software package for hit list management.

25 May 2018

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Prospects for fungus identification using CO1 DNA barcodes, with Penicillium as a test case.

25 May 2018

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Taxonomic reliability of DNA sequences in public sequence databases: a fungal perspective

25 May 2018

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Identification of medically important yeast species by sequence analysis of the internal transcribed spacer regions

25 May 2018

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A 'dirty' business: testing the limitations of terminal restriction fragment length polymorphism (TRFLP) analysis of soil fungi.

25 May 2018

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Indoor exposures and respiratory symptoms in a Norwegian community sample

25 May 2018

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Approaching the taxonomic affiliation of unidentified sequences in public databases--an example from the mycorrhizal fungi

25 May 2018

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UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi

25 May 2018

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MAFFT version 5: improvement in accuracy of multiple sequence alignment

25 May 2018

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galaxieEST: addressing EST identity through automated phylogenetic analysis

25 May 2018

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The molecular revolution in ectomycorrhizal ecology: peeking into the black-box.

25 May 2018

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Microfungal contamination of damp buildings--examples of risk constructions and risk materials

25 May 2018

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Profile hidden Markov models

25 May 2018

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The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

25 May 2018

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

25 May 2018

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Intraspecific ITS variability in the kingdom fungi as expressed in the international sequence databases and its implications for molecular species identification.

25 May 2018

1 reference

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An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web-based tool for the exploration of fungal diversity.

15 August 2018

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Quantitative PCR analysis of fungi and bacteria in building materials and comparison to culture-based analysis.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649129

Internal transcribed spacer primers and sequences for improved characterization of basidiomycetous orchid mycorrhizas.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649129

PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649129

Automated phylogenetic taxonomy: an example in the homobasidiomycetes (mushroom-forming fungi).

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649129

galaxie--CGI scripts for sequence identification through automated phylogenetic analysis.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649129

Organization of ribosomal DNA in the basidiomycete Thanatephorus praticola

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649129

15 August 2018

Identifiers

DOI

10.1186/1751-0473-4-1

1 reference

journals/scfbm/NilssonBRKH09

15 November 2017

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

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15 November 2017

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