Application of recognition of individual genes-fluorescence in situ hybridization (RING-FISH) to detect nitrite reductase genes (nirK) of denitrifiers in pure cultures and environmental samples. (Q43192430)

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scientific article published on 12 December 2008

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English	Application of recognition of individual genes-fluorescence in situ hybridization (RING-FISH) to detect nitrite reductase genes (nirK) of denitrifiers in pure cultures and environmental samples.	scientific article published on 12 December 2008

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scholarly article

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074610%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

Application of recognition of individual genes-fluorescence in situ hybridization (RING-FISH) to detect nitrite reductase genes (nirK) of denitrifiers in pure cultures and environmental samples (English)

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Europe PubMed Central

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18 January 2020

Jennifer Pratscher

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18 January 2020

Karl-Heinz Schleifer

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Karl-Heinz Schleifer

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18 January 2020

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Catrin Stichternoth

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18 January 2020

Katrin Fichtl

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18 January 2020

Gesche Braker

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18 January 2020

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12 December 2008

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18 January 2020

Applied and Environmental Microbiology

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18 January 2020

75

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18 January 2020

3

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18 January 2020

802-810

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18 January 2020

Impact of plant functional group, plant species, and sampling time on the composition of nirK-type denitrifier communities in soil

1 reference

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25 May 2018

Analysis of nitrite reductase (nirK and nirS) genes and cultivation reveal depauperate community of denitrifying bacteria in the Black Sea suboxic zone

1 reference

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25 May 2018

Identification of acetate- or methanol-assimilating bacteria under nitrate-reducing conditions by stable-isotope probing

1 reference

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Metabolic profiles and genetic diversity of denitrifying communities in activated sludge after addition of methanol or ethanol

1 reference

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Macroscopic streamer growths in acidic, metal-rich mine waters in north wales consist of novel and remarkably simple bacterial communities

1 reference

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Identification of Whole Fixed Bacterial Cells with Nonradioactive 23S rRNA-Targeted Polynucleotide Probes.

1 reference

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25 May 2018

Fluorescence in situ hybridisation (FISH)--the next generation

1 reference

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25 May 2018

Use of stable-isotope probing, full-cycle rRNA analysis, and fluorescence in situ hybridization-microautoradiography to study a methanol-fed denitrifying microbial community

1 reference

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25 May 2018

Improved method for polynucleotide probe-based cell sorting, using DNA-coated microplates.

1 reference

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25 May 2018

Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico

1 reference

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25 May 2018

Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils

1 reference

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Comparison of fluorescently labeled oligonucleotide and polynucleotide probes for the detection of pelagic marine bacteria and archaea

1 reference

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25 May 2018

Community structure of denitrifiers, bacteria, and archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes

1 reference

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Archaeal dominance in the mesopelagic zone of the Pacific Ocean

1 reference

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25 May 2018

Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632154

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Quantification of Hyphomicrobium populations in activated sludge from an industrial wastewater treatment system as determined by 16S rRNA analysis

1 reference

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Visualization and enumeration of marine planktonic archaea and bacteria by using polyribonucleotide probes and fluorescent in situ hybridization

1 reference

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The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632154

25 May 2018

Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632154

25 May 2018

Cell biology and molecular basis of denitrification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632154

25 May 2018

Phylogenetic analysis and in situ identification of bacteria in activated sludge

1 reference

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1 reference

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25 May 2018

Population analysis in a denitrifying sand filter: conventional and in situ identification of Paracoccus spp. in methanol-fed biofilms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632154

25 May 2018

Characterization of the structural gene encoding a copper-containing nitrite reductase and homology of this gene to DNA of other denitrifiers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2632154

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Copper-containing nitrite reductase from Pseudomonas aureofaciens is functional in a mutationally cytochrome cd1-free background (NirS-) of Pseudomonas stutzeri

1 reference

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Phylogenetic identification and in situ detection of individual microbial cells without cultivation

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Immunological identification and distribution of dissimilatory heme cd1 and nonheme copper nitrite reductases in denitrifying bacteria

1 reference

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1 reference

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1 reference

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In situ functional gene analysis: recognition of individual genes by fluorescence in situ hybridization.

1 reference

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15 August 2018

Communities of nirS-type denitrifiers in the water column of the oxygen minimum zone in the eastern South Pacific.

1 reference

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1 reference

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Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater

1 reference

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1 reference

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1 December 2018

Denitrification

1 reference

https://pubmed.ncbi.nlm.nih.gov/19074610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

rRNA probe-based cell fishing of bacteria

1 reference

https://pubmed.ncbi.nlm.nih.gov/19074610

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1128/AEM.01992-08

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074610%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

release_evwdsyblurhapl6jia2qav56ky

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https://api.fatcat.wiki/v0/release/evwdsyblurhapl6jia2qav56ky

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074610%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

PubMed publication ID

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18 January 2020

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