Metal ion probing of rRNAs: evidence for evolutionarily conserved divalent cation binding pockets. (Q43206321)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9769102%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

title

Metal ion probing of rRNAs: evidence for evolutionarily conserved divalent cation binding pockets (English)

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5 December 2019

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2

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5 December 2019

Norbert Polacek

series ordinal

1

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5 December 2019

author name string

Polacek N

series ordinal

1

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16 November 2017

language of work or name

English

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publication date

1 October 1998

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5 December 2019

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5 December 2019

volume

4

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5 December 2019

issue

10

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5 December 2019

page(s)

1282-1294

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Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain

5 December 2019

cites work

1 reference

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Peptide bond formation by in vitro selected ribozymes

25 May 2018

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A new model for the three-dimensional folding of Escherichia coli 16 S ribosomal RNA. II. The RNA-protein interaction data

25 May 2018

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Lead-catalysed specific cleavage of ribosomal RNAs

25 May 2018

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Metal-binding sites in the major groove of a large ribozyme domain

25 May 2018

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A curved RNA helix incorporating an internal loop with G.A and A.A non-Watson-Crick base pairing

25 May 2018

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Computational methods for defining the allowed conformational space of 16S rRNA based on chemical footprinting data.

25 May 2018

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The environment of two metal ions surrounding the splice site of a group I intron

25 May 2018

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Mapping the rRNA neighborhood of the acceptor end of tRNA in the ribosome

25 May 2018

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Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective.

25 May 2018

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Three-dimensional structure of a hammerhead ribozyme

25 May 2018

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GTP consumption of elongation factor Tu during translation of heteropolymeric mRNAs

25 May 2018

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Divalent metal ion binding to a conserved wobble pair defining the upstream site of cleavage of group I self-splicing introns

25 May 2018

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Stabilization of a ribosomal RNA tertiary structure by ribosomal protein L11.

25 May 2018

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Frequent use of the same tertiary motif by self-folding RNAs

25 May 2018

1 reference

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Site-directed cross-linking studies on the E. coli tRNA-ribosome complex: determination of sites labelled with an aromatic azide attached to the variable loop or aminoacyl group of tRNA

25 May 2018

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Lead cleavage sites in the core structure of group I intron-RNA.

25 May 2018

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Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA

25 May 2018

1 reference

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Exceptionally stable nucleic acid hairpins

25 May 2018

1 reference

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The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

25 May 2018

1 reference

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Lead-catalyzed cleavage of ribonuclease P RNA as a probe for integrity of tertiary structure

25 May 2018

1 reference

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Secondary structure model for 23S ribosomal RNA.

25 May 2018

1 reference

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Structure of ribosomal RNA

25 May 2018

1 reference

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Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure

25 May 2018

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Primary and secondary structures of Escherichia coli MRE 600 23S ribosomal RNA. Comparison with models of secondary structure for maize chloroplast 23S rRNA and for large portions of mouse and human 16S mitochondrial rRNAs

25 May 2018

1 reference

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Erythromycin and spiramycin resistance mutations of yeast mitochondria: nature of therib2locus in the large ribosomal RNA gene

25 May 2018

1 reference

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Ribosome-Catalyzed Peptidyl Transfer. Effects of Cations and pH Value

25 May 2018

1 reference

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Peptidyl-Puromycin Synthesis on Polyribosomes from Escherichia coli

25 May 2018

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Evidence for functional interaction between domains II and V of 23S ribosomal RNA from an erythromycin-resistant mutant

25 May 2018

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Crystallographic and biochemical investigation of the lead(II)-catalyzed hydrolysis of yeast phenylalanine tRNA

25 May 2018

1 reference

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Structure and function of ribosomal RNA.

25 May 2018

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Chloramphenicol-erythromycin resistance mutations in a 23S rRNA gene of Escherichia coli

25 May 2018

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Chloramphenicol, erythromycin, carbomycin and vernamycin B protect overlapping sites in the peptidyl transferase region of 23S ribosomal RNA.

25 May 2018

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Photo-affinity labelling at the peptidyl transferase centre reveals two different positions for the A- and P-sites in domain V of 23S rRNA

25 May 2018

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Labeling the peptidyltransferase center of the Escherichia coli ribosome with photoreactive tRNA(Phe) derivatives containing azidoadenosine at the 3' end of the acceptor arm: a model of the tRNA-ribosome complex

25 May 2018

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Architecture of ribosomal RNA: constraints on the sequence of "tetra-loops"

25 May 2018

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Site-specific cleavage by metal ion cofactors and inhibitors of M1 RNA, the catalytic subunit of RNase P from Escherichia coli

25 May 2018

1 reference

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Unusual resistance of peptidyl transferase to protein extraction procedures

25 May 2018

1 reference

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Structure and accessibility of domain I of Escherichia coli 23 S RNA in free RNA, in the L24-RNA complex and in 50 S subunits. Implications for ribosomal assembly.

25 May 2018

1 reference

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Possible involvement of Escherichia coli 23S ribosomal RNA in peptide bond formation.

25 May 2018

1 reference

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Patterns of cleavages induced by lead ions in defined RNA secondary structure motifs.

15 August 2018

1 reference

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Purification of two picornaviral 2A proteinases: interaction with eIF-4 gamma and influence on in vitro translation

15 August 2018

1 reference

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Stabilization of RNA structure by Mg ions. Specific and non-specific effects.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1369700

G.U base pairing motifs in ribosomal RNA.

15 August 2018

1 reference

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Interaction of tRNA with 23S rRNA in the ribosomal A, P, and E sites

15 August 2018

1 reference

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Cations and ribosome structure. III. Effects on the 30S and 50S subunits of replacing bound Mg2+ by inorganic cations

15 August 2018

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12 December 2020

Pb(II)-catalysed cleavage of the sugar–phosphate backbone of yeast tRNAPhe—implications for lead toxicity and self-splicing RNA

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12 December 2020

Parameters for the preparation of Escherichia coli ribosomes and ribosomal subunits active in tRNA binding

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12 December 2020

Use of lead(II) to probe the structure of large RNA's. Conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites

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12 December 2020

Properties of an in vitro selected Pb2+ cleavage motif

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12 December 2020

Cleavages induced by different metal ions in yeast tRNA(Phe) U59C60 mutants

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12 December 2020

Context dependent RNA-RNA recognition in a three-dimensional model of the 16S rRNA core

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12 December 2020

A magnesium ion core at the heart of a ribozyme domain

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12 December 2020

10.1017/S1355838298980347

Identifiers

DOI

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9769102%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:9769102%20AND%20SRC:MED&resulttype=core&format=json

5 December 2019

PubMed publication ID

9769102

1 reference