Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements. (Q43207204)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15100442%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

title

Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements (English)

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27 December 2019

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1

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27 December 2019

author name string

Timothy J Wilson

2

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27 December 2019

Sumedha D Jayasena

3

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27 December 2019

Anastasia Khvorova

4

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27 December 2019

David M J Lilley

5

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27 December 2019

language of work or name

English

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publication date

1 May 2004

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27 December 2019

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27 December 2019

volume

10

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27 December 2019

issue

5

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27 December 2019

page(s)

880-888

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Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity

27 December 2019

cites work

1 reference

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The origins of RNA catalysis in ribozymes

25 May 2018

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A helical twist-induced conformational switch activates cleavage in the hammerhead ribozyme

25 May 2018

1 reference

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A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

25 May 2018

1 reference

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Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

25 May 2018

1 reference

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Folding and activity of the hammerhead ribozyme

25 May 2018

1 reference

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The role of metal ions in RNA catalysis

25 May 2018

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Correlating structural dynamics and function in single ribozyme molecules

25 May 2018

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Cold denaturation of the hammerhead ribozyme

25 May 2018

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A pH-dependent conformational change, rather than the chemical step, appears to be rate-limiting in the hammerhead ribozyme cleavage reaction

25 May 2018

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Dissection of the ion-induced folding of the hammerhead ribozyme using 19F NMR.

25 May 2018

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Importance of specific nucleotides in the folding of the natural form of the hairpin ribozyme

25 May 2018

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Recent advances in the elucidation of the mechanisms of action of ribozymes

25 May 2018

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Crystal structure of a hairpin ribozyme-inhibitor complex with implications for catalysis

25 May 2018

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Thermodynamics of ion-induced RNA folding in the hammerhead ribozyme: an isothermal titration calorimetric study.

25 May 2018

1 reference

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The folding of the hairpin ribozyme: dependence on the loops and the junction

25 May 2018

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Multiple conformational states of the hammerhead ribozyme, broad time range of relaxation and topology of dynamics

25 May 2018

1 reference

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Capture and visualization of a catalytic RNA enzyme-product complex using crystal lattice trapping and X-ray holographic reconstruction

25 May 2018

1 reference

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Structure and function of the hairpin ribozyme

25 May 2018

1 reference

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Identification of the hammerhead ribozyme metal ion binding site responsible for rescue of the deleterious effect of a cleavage site phosphorothioate

25 May 2018

1 reference

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Tertiary structure stabilization promotes hairpin ribozyme ligation

25 May 2018

1 reference

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RNA folding and misfolding of the hammerhead ribozyme.

25 May 2018

1 reference

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Schistosome satellite DNA encodes active hammerhead ribozymes

25 May 2018

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Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study

25 May 2018

1 reference

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Capturing the structure of a catalytic RNA intermediate: the hammerhead ribozyme

25 May 2018

1 reference

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Three-dimensional structure of a hammerhead ribozyme

25 May 2018

1 reference

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The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

25 May 2018

1 reference

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An oligodeoxyribonucleotide that supports catalytic activity in the hammerhead ribozyme domain

25 May 2018

1 reference

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57 Sequencing end-labeled DNA with base-specific chemical cleavages

25 May 2018

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Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

25 May 2018

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Self-cleavage of plus and minus RNAs of a virusoid and a structural model for the active sites

25 May 2018

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Nucleotide sequence and newly formed phosphodiester bond of spontaneously ligated satellite tobacco ringspot virus RNA.

25 May 2018

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Role of divalent metal ions in the hammerhead RNA cleavage reaction

25 May 2018

1 reference

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Numbering system for the hammerhead

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370577

Fluorescence resonance energy transfer and nucleic acids

25 May 2018

1 reference

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Diffusely bound Mg2+ ions slightly reorient stems I and II of the hammerhead ribozyme to increase the probability of formation of the catalytic core

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370577

Stability of hairpin ribozyme tertiary structure is governed by the interdomain junction

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370577

The ion-induced folding of the hammerhead ribozyme: core sequence changes that perturb folding into the active conformation.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370577

Simple RNA enzymes with new and highly specific endoribonuclease activities

15 August 2018

1 reference

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Advanced 5'-silyl-2'-orthoester approach to RNA oligonucleotide synthesis

15 August 2018

1 reference

12 December 2020

A covalent crosslink converts the hammerhead ribozyme from a ribonuclease to an RNA ligase

1 reference

12 December 2020

Origins of RNA catalysis in the hairpin ribozyme

1 reference

12 December 2020

Internal equilibrium of the hammerhead ribozyme is altered by the length of certain covalent cross-links

1 reference

12 December 2020

The global conformation of the hammerhead ribozyme determined using residual dipolar couplings

1 reference

12 December 2020

Ribozymes--a snip too far?

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12 December 2020

A small catalytic oligoribonucleotide

1 reference

12 December 2020

Ionic interactions and the global conformations of the hammerhead ribozyme

1 reference

12 December 2020

The global conformation of an active hammerhead RNA during the process of self-cleavage

1 reference

12 December 2020

Mg(2+)-dependent conformational changes in the hammerhead ribozyme

1 reference

12 December 2020

Folding of the hairpin ribozyme in its natural conformation achieves close physical proximity of the loops

1 reference

12 December 2020

Identifiers

DOI

10.1261/RNA.5268404

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15100442%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15100442%20AND%20SRC:MED&resulttype=core&format=json

27 December 2019

PubMed publication ID

15100442

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15100442%20AND%20SRC:MED&resulttype=core&format=json