MSB: a mean-shift-based approach for the analysis of structural variation in the genome (Q43214379)

16 November 2017

MSB: a mean-shift-based approach for the analysis of structural variation in the genome (English)

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Mark Gerstein

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Michael Snyder

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16 November 2017

Lu-Yong Wang

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26 November 2008

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106-117

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PMC publication ID

2612956

describes a project that uses

16 November 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/2612956

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Mapping short DNA sequencing reads and calling variants using mapping quality scores

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Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing

25 May 2018

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The complete genome of an individual by massively parallel DNA sequencing

25 May 2018

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The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse

25 May 2018

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Identification of cancer genes using a statistical framework for multiexperiment analysis of nondiscretized array CGH data

25 May 2018

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Paired-end mapping reveals extensive structural variation in the human genome

25 May 2018

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Systematic prediction and validation of breakpoints associated with copy-number variants in the human genome

25 May 2018

1 reference

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Continuous-index hidden Markov modelling of array CGH copy number data

25 May 2018

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Resolving the resolution of array CGH.

25 May 2018

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A faster circular binary segmentation algorithm for the analysis of array CGH data

25 May 2018

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Differential disruption of cell cycle pathways in small cell and non-small cell lung cancer.

25 May 2018

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

25 May 2018

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High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays

25 May 2018

1 reference

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High resolution analysis of non-small cell lung cancer cell lines by whole genome tiling path array CGH.

25 May 2018

1 reference

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Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data

25 May 2018

1 reference

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Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH.

25 May 2018

1 reference

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Array comparative genomic hybridization and its applications in cancer

25 May 2018

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Fine-scale structural variation of the human genome

25 May 2018

1 reference

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Denoising array-based comparative genomic hybridization data using wavelets

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

A statistical approach for array CGH data analysis

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

A method for calling gains and losses in array CGH data

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Quantile smoothing of array CGH data

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Circular binary segmentation for the analysis of array-based DNA copy number data

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Analysis of array CGH data: from signal ratio to gain and loss of DNA regions

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Detection of large-scale variation in the human genome

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Accurate detection of aneuploidies in array CGH and gene expression microarray data

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Large-scale copy number polymorphism in the human genome

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

High-resolution global profiling of genomic alterations with long oligonucleotide microarray

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Current status and future prospects of array-based comparative genomic hybridisation

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Breakpoint identification and smoothing of array comparative genomic hybridization data

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Representational oligonucleotide microarray analysis: a high-resolution method to detect genome copy number variation

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Chromosomal localization of DNA amplifications in neuroblastoma tumors using cDNA microarray comparative genomic hybridization.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Genome-wide analysis of DNA copy-number changes using cDNA microarrays

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Matrix-based comparative genomic hybridization: biochips to screen for genomic imbalances

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Interstitial 9q22.3 microdeletion: clinical and molecular characterisation of a newly recognised overgrowth syndrome.

25 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

High-resolution genome-wide mapping of genetic alterations in human glial brain tumors

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Genome scanning with array CGH delineates regional alterations in mouse islet carcinomas

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

Widespread aneuploidy revealed by DNA microarray expression profiling.

15 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2612956

A tiling resolution DNA microarray with complete coverage of the human genome

15 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19037015

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.080069.108

1 reference

16 November 2017

1 reference

PMC publication ID

2612956

16 November 2017

PubMed publication ID

19037015

1 reference

PMC publication ID

2612956