RNAplex: a fast tool for RNA-RNA interaction search (Q43409460)

23 November 2017

RNAplex: a fast tool for RNA-RNA interaction search (English)

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23 November 2017

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23 November 2017

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PubMed ID

18434344

23 November 2017

language of work or name

English

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publication date

23 April 2008

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23 November 2017

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23 November 2017

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23 November 2017

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23 November 2017

2657-2663

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RNA-RNA interaction prediction and antisense RNA target search.

23 November 2017

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Molecular basis for target RNA recognition and cleavage by human RISC.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Secondary structure prediction of interacting RNA molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

The expanding snoRNA world

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Control of developmental timing by small temporal RNAs: a paradigm for RNA-mediated regulation of gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

RNA editing in trypanosomes. The us(e) of guide RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Partition function and base pairing probabilities of RNA heterodimers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

MicC, a second small-RNA regulator of Omp protein expression in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Complex formed by complementary RNA stem-loops and its stabilization by a protein: Function of ColE1 Rom protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Hfq, a new chaperoning role: binding to messenger RNA determines access for small RNA regulator

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Fast folding and comparison of RNA secondary structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Base-pairing requirement for RNA silencing by a bacterial small RNA and acceleration of duplex formation by Hfq

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

The role of site accessibility in microRNA target recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Argonaute-1 directs siRNA-mediated transcriptional gene silencing in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

An RNA transcriptional regulator templates its own regulatory RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Riboregulation in Escherichia coli: DsrA RNA acts by RNA:RNA interactions at multiple loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Potent effect of target structure on microRNA function.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Spot 42 RNA mediates discoordinate expression of the E. coli galactose operon

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

A pattern-based method for the identification of MicroRNA binding sites and their corresponding heteroduplexes

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Thermodynamics of RNA-RNA binding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Improved tools for biological sequence comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Regulation of ompA mRNA stability: the role of a small regulatory RNA in growth phase-dependent control.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Fast and effective prediction of microRNA/target duplexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

HotKnots: heuristic prediction of RNA secondary structures including pseudoknots.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

A brain-specific microRNA regulates dendritic spine development

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

TarBase: A comprehensive database of experimentally supported animal microRNA targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

21 January 2018

RNA structure prediction

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

A conserved small RNA promotes discoordinate expression of the glmUS operon mRNA to activate GlmS synthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

A Novel Synapse-Associated Noncoding RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Structured RNAs in the ENCODE selected regions of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Cloning of Caenorhabditis U2AF65: an alternatively spliced RNA containing a novel exon

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Calculating nucleic acid secondary structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTN193

10.1093/BIOINFORMATICS/BTN193

21 January 2018

Identifiers

DOI

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journals/bioinformatics/TaferH08

23 November 2017

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

18434344